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[175954_at]

Description Y50D4C.B /REP_DB=WormBase Gene ID /WP=CE26544 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 91      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 4.7
(-3)
A 		28.6
(3)
A 		7.4
(-2.3)
A 		5
(-2.9)
A 		24
B 6.2
(-2.9)
A 		6.1
(-3)
A 		14.1
(3)
A 		8.3
(-1.4)
A 		8
C 4.5
(-2.7)
A 		12.8
(0.1)
A 		3.6
(-3)
A 		21.3
(3)
A 		18
avr 5.1
(-3) 		15.8
(3) 		8.4
(-1.1) 		11.5
(0.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 12.9
(3)
A 		2.6
(-2.8)
A 		2.3
(-3)
A 		8.8
(0.7)
A 		8.8
(0.7)
A 		3.4
(-2.4)
A 		11
B 5.4
(-2.7)
A 		6.9
(-2.4)
A 		3.6
(-3)
A 		11.5
(-1.6)
A 		36.9
(3)
A 		6.5
(-2.5)
A 		33
C 3.9
(-2.7)
A 		5.6
(-2.4)
A 		11.8
(-1.2)
A 		32.8
(3)
A 		2.6
(-3)
A 		3.6
(-2.8)
A 		30
avr 7.4
(-1.7) 		5
(-2.8) 		5.9
(-2.4) 		17.7
(3) 		16.1
(2.3) 		4.5
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.7
(-1.9)
A 		6.2
(3)
A 		1.9
(-1.7)
A 		0.7
(-3)
A 		6
B 2
(-1.3)
A 		1.5
(-3)
A 		3.3
(3)
A 		1.8
(-2)
A 		2
C 1.5
(-2.3)
A 		3.7
(3)
A 		1.2
(-3)
A 		3.6
(2.8)
A 		3
avr 1.7
(-3) 		3.8
(3) 		2.1
(-1.9) 		2
(-2.1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.4
(2.4)
A 		0.9
(-1.9)
A 		0.5
(-3)
A 		2.2
(1.9)
A 		2.6
(3)
A 		0.8
(-2.1)
A 		2
B 1.9
(-2.6)
A 		2.3
(-2.4)
A 		0.9
(-3)
A 		3
(-2.1)
A 		15
(3)
A 		2.4
(-2.4)
A 		14
C 1.5
(-2.3)
A 		1.7
(-2.1)
A 		3
(-0.7)
A 		6.6
(3)
A 		0.8
(-3)
A 		1.2
(-2.6)
A 		6
avr 1.9
(-2.5) 		1.6
(-2.9) 		1.5
(-3) 		3.9
(0.1) 		6.1
(3) 		1.5
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175954_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19465
Sequence Type Exemplar sequence
Representative Public ID Y50D4C.B NCBI
Target Description Y50D4C.B /REP_DB=WormBase Gene ID /WP=CE26544 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070960(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070960 NCBI Caenorhabditis elegans Y50D4C.5 (Y50D4C.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000044743 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:998237:1001739:-1 11/11 None
Y50D4C.5 ENSEMBL cdna:known chromosome:CEL140:V:998276:1003422:-1 gene:Y50D4C.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:998275-1001223(-) 99.52 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50D4C.5
Entrez Gene 190100 Entrez gene
WormBase CE39053 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68510 Hypothetical protein Y50D4C.5 [Caenorhabditis elegans] ref|NP_503361.1| Y50D4C.5 [Caenorhabditis elegans] 0.0
blast CAE71044 Hypothetical protein CBG17886 [Caenorhabditis briggsae] 9.0E-88
blast AAK68510 Hypothetical protein Y50D4C.5 [Caenorhabditis elegans] ref|NP_503361.1| Y50D4C.5 [Caenorhabditis elegans] 2.0E-80
blast CAE71044 Hypothetical protein CBG17886 [Caenorhabditis briggsae] 1.0E-50
Sequence
Target Sequence 
>C. ELEGANS:175954_AT
cggatgtgacgctggcgtctaccgcgtccacgccaacgccatctacaccactcccgacgc
gaccggcggcggcggcagcacagaaatctgtgaaacaggaggtctacgagcagagctcct
cgtcaaactgtccgagcatctcgtcgactcctcgatcgtcggaggatcctgcgaatcagc
agcagcagcagcttcagggccagaatgttgtattcggggctcatccagagcatctgaata
atctgtggatggtttccaaggaaattcgcgatcagcagcttcaactcgagcgttcaattc
cgctgttggagaagctaagaacacgcgcgatggacatagatcaacagagaatagcgttgt
tggatgaaaaactcgataatccgagtgttgacgatgtgagagaaattatttttttaaggg
aaattatgcgtcgagtatggagcatcaatcgtgaacttcaggacctcaattcggagatgg
gaatggcatcgttgacgattcagaatgcaaacgaattccttccatatctggaaatgcgtc
gaaacgagcttctctcgaataatccgccgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGATGTGACGCTGGCGTCTACCGC 630 241 17 Antisense
GTCTACGAGCAGAGCTCCTCGTCAA 15 469 118 Antisense
TCGTCAAACTGTCCGAGCATCTCGT 39 603 136 Antisense
GACTCCTCGATCGTCGGAGGATCCT 443 373 162 Antisense
GAATGTTGTATTCGGGGCTCATCCA 589 331 219 Antisense
AATTCGCGATCAGCAGCTTCAACTC 570 177 279 Antisense
AACTCGAGCGTTCAATTCCGCTGTT 61 141 299 Antisense
GTGAACTTCAGGACCTCAATTCGGA 646 481 467 Antisense
GCAAACGAATTCCTTCCATATCTGG 500 317 523 Antisense
AATGCGTCGAAACGAGCTTCTCTCG 614 165 549 Antisense
GCTTCTCTCGAATAATCCGCCGAAT 75 307 564 Antisense
Sequence Source Affymetrix Proprietary Database