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[175952_at]

Description F41G4.1 /REP_DB=WormBase Gene ID /WP=CE04545 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 88.9
(3)
A 		60
(-0.1)
A 		32.8
(-3)
A 		84.5
(2.5)
A 		56
B 75.3
(3)
P 		53.7
(0.2)
A 		35
(-2.3)
A 		29.6
(-3)
A 		46
C 117.1
(3)
P 		35
(-2)
A 		17.6
(-3)
A 		69
(0.1)
A 		100
avr 93.8
(3) 		49.6
(-1.1) 		28.5
(-3) 		61
(-0) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 80.9
(1.7)
A 		101.8
(3)
P 		69.2
(1)
A 		80.8
(1.7)
P 		4.4
(-3)
A 		70.9
(1.1)
A 		97
B 65.5
(0.8)
A 		62
(0.4)
M 		85.4
(3)
A 		38.4
(-2.3)
A 		61.3
(0.3)
A 		32
(-3)
A 		53
C 77
(3)
A 		58.9
(0.6)
A 		47.5
(-1)
A 		40.3
(-1.9)
A 		56.1
(0.2)
A 		32.4
(-3)
A 		45
avr 74.5
(3) 		74.2
(2.9) 		67.4
(1.7) 		53.2
(-0.8) 		40.6
(-3) 		45.1
(-2.2) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 32.4
(3)
A 		13
(-1.9)
A 		8.6
(-3)
A 		12.4
(-2)
A 		24
B 24
(3)
P 		13.3
(-0.6)
A 		8.1
(-2.4)
A 		6.3
(-3)
A 		18
C 38.8
(3)
P 		10.1
(-2.3)
A 		6.1
(-3)
A 		11.6
(-2)
A 		33
avr 31.7
(3) 		12.1
(-1.9) 		7.6
(-3) 		10.1
(-2.4) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 14.9
(-0.7)
A 		36.2
(3)
P 		15.1
(-0.6)
A 		20.5
(0.3)
P 		1.3
(-3)
A 		17.3
(-0.2)
A 		35
B 22.8
(2.1)
A 		20.7
(1.3)
M 		20.7
(1.3)
A 		10.2
(-3)
A 		24.9
(3)
A 		11.9
(-2.3)
A 		15
C 28.5
(3)
A 		18
(-0.1)
A 		12.1
(-1.8)
A 		8.1
(-3)
A 		18.2
(-0)
A 		10.9
(-2.2)
A 		20
avr 22.1
(1.6) 		25
(3) 		16
(-1.5) 		12.9
(-3) 		14.8
(-2.1) 		13.4
(-2.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175952_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17819
Sequence Type Exemplar sequence
Representative Public ID F41G4.1 NCBI
Target Description F41G4.1 /REP_DB=WormBase Gene ID /WP=CE04545 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078319 NCBI Caenorhabditis elegans F41G4.1 (F41G4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000036417 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16841018:16842831:1 11/11 None
F41G4.1 ENSEMBL cdna:known chromosome:CEL140:X:16841018:16842831:1 gene:F41G4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036414 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16841017-16842831(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41G4.1
Entrez Gene 185634 Entrez gene
SwissProt Q95YA5 EMBL-EBI
WormBase CE04545 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603960_AT similar to axonemal dynein light chain cfa
CANINE_2:CFA.8850.1.A1_AT similar to axonemal dynein light chain cfa
CANINE_2:CFA.8850.1.A1_S_AT similar to axonemal dynein light chain cfa
CANINE_2:CFAAFFX.5867.1.S1_AT similar to axonemal dynein light chain cfa
DROSOPHILA_2:1627798_AT dm
DROSGENOME1:152976_AT dm
CHICKEN:GGA.6068.3.S1_AT similar to axonemal dynein light chain; inner dynein arm, homolog of clamydomonas gga
HG-U133_PLUS_2:205186_AT dynein, axonemal, light intermediate polypeptide 1 hs
HG-U133A:205186_AT dynein, axonemal, light intermediate polypeptide 1 hs
HG-FOCUS:205186_AT dynein, axonemal, light intermediate polypeptide 1 hs
HG-U133A_2:205186_AT dynein, axonemal, light intermediate polypeptide 1 hs
HU35KSUBA:RC_AA435678_AT dynein, axonemal, light intermediate polypeptide 1 hs
HU35KSUBA:AA402541_AT dynein, axonemal, light intermediate polypeptide 1 hs
HU35KSUBB:RC_W45433_AT dynein, axonemal, light intermediate polypeptide 1 hs
U133_X3P:G13518030_3P_AT dynein, axonemal, light intermediate polypeptide 1 hs
U133_X3P:HS.191254.0.A1_3P_AT dynein, axonemal, light intermediate polypeptide 1 hs
HG-U133_PLUS_2:227081_AT dynein, axonemal, light intermediate polypeptide 1 hs
HG-U133B:227081_AT dynein, axonemal, light intermediate polypeptide 1 hs
HG-U95AV2:35676_AT dynein, axonemal, light intermediate polypeptide 1 hs
HG-U95C:51007_AT dynein, axonemal, light intermediate polypeptide 1 hs
HG-U95B:59123_AT dynein, axonemal, light intermediate polypeptide 1 hs
MOE430B:1455379_AT dynein, axonemal, light intermediate polypeptide 1 mm
MOUSE430_2:1455379_AT dynein, axonemal, light intermediate polypeptide 1 mm
MG-U74CV2:167796_F_AT dynein, axonemal, light intermediate polypeptide 1 mm
MG-U74CV2:165803_S_AT dynein, axonemal, light intermediate polypeptide 1 mm
MOE430B:1436126_AT dynein, axonemal, light intermediate polypeptide 1 mm
MOUSE430_2:1436126_AT dynein, axonemal, light intermediate polypeptide 1 mm
MG-U74CV2:166025_I_AT Dynein, axonemal, light intermediate polypeptide 1 (Dnali1), mRNA mm
MU19KSUBB:TC28182_AT Dynein, axonemal, light intermediate polypeptide 1 (Dnali1), mRNA mm
RG-U34B:RC_AA997616_AT dynein, axonemal, light intermediate polypeptide 1 (predicted) rn
RAE230B:1384830_AT dynein, axonemal, light intermediate polypeptide 1 (predicted) rn
RAT230_2:1384830_AT dynein, axonemal, light intermediate polypeptide 1 (predicted) rn
RAE230B:1386699_AT dynein, axonemal, light intermediate polypeptide 1 (predicted) rn
RAT230_2:1386699_AT dynein, axonemal, light intermediate polypeptide 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK85480 Hypothetical protein F41G4.1 [Caenorhabditis elegans] ref|NP_510720.1| F41G4.1 [Caenorhabditis elegans] 1.0E-149
blast CAE69903 Hypothetical protein CBG16255 [Caenorhabditis briggsae] 1.0E-137
blast NP_999680 axonemal dynein light chain p33 [Strongylocentrotus purpuratus] sp|Q26630|IDLC_STRPU 33 kDa inner dynein arm light chain, axonemal (p33) gb|AAC47111.1| axonemal dynein light chain p33 7.0E-40
Sequence
Target Sequence 
>C. ELEGANS:175952_AT
attcttgattgtatacttccgccgagagtttacgaacaaaacggaaaactatggaaacag
caagcgtcgcttcatcctgctacgcgacatgacatgataaatctcgaggaaaaactggaa
agcgagttaaaagaccggggagcaaaaccattcggaatatgcccaattcgacgcgatctt
tacggccagtttttcgatgagctaatccgtcaagtcagtgtctcctgtgtggaaagaggt
cttttattggttcgcgttcgtgatgaaattcgaatgacttttgcagcctaccagaatgta
ctagagtcggcgattgcatatggtgtcagaaaagcgctgttcattgaaaacgaacaaaca
cgggcgacgactgaatggaaagtgcaaaaggacaagaacaaggagcttcatctaaagatt
gcccaattggagaaaaaattggcaacggataaaattgtaagcgaggaggaattggaaatt
gtggagcaacgaatgaaggacaccaacgagcgccttgtagagtcaaatagaattctcaaa
aaccagcttcagtcgattcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTTGATTGTATACTTCCGCCGA 129 11 217 Antisense
AAACAGCAAGCGTCGCTTCATCCTG 459 129 271 Antisense
CATCCTGCTACGCGACATGACATGA 530 211 289 Antisense
AATATGCCCAATTCGACGCGATCTT 422 173 372 Antisense
TTACGGCCAGTTTTTCGATGAGCTA 542 681 396 Antisense
GTCAAGTCAGTGTCTCCTGTGTGGA 685 463 425 Antisense
TCTTTTATTGGTTCGCGTTCGTGAT 368 613 456 Antisense
TTCGAATGACTTTTGCAGCCTACCA 183 695 485 Antisense
GTCGGCGATTGCATATGGTGTCAGA 288 471 522 Antisense
ACACCAACGAGCGCCTTGTAGAGTC 385 97 716 Antisense
AAAACCAGCTTCAGTCGATTCTTCA 455 131 755 Antisense
Sequence Source Affymetrix Proprietary Database