[Home] | [Total List]

[175950_s_at]

Description H33H01.A /REP_DB=WormBase Gene ID /WP=CE21006 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 08      4grp_high_8_8 > 18      6grp_total > 33      4grp_total > 46      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 137.6
(3)
P 		90
(-1.7)
P 		137.1
(3)
P 		76.9
(-3)
M 		61
B 138.7
(3)
P 		103.3
(0.1)
A 		65.3
(-3)
P 		81.8
(-1.7)
M 		73
C 146
(3)
P 		127.1
(1.4)
P 		75.3
(-3)
P 		124.1
(1.1)
P 		71
avr 140.8
(3) 		106.8
(-1.2) 		92.6
(-3) 		94.3
(-2.8) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 132.9
(-3)
A 		156
(3)
P 		134.9
(-2.5)
P 		134
(-2.7)
P 		142.1
(-0.6)
P 		146.2
(0.5)
P 		23
B 117.2
(-2.4)
P 		129.2
(-1.7)
P 		212.6
(3)
P 		116.2
(-2.5)
P 		121.6
(-2.2)
P 		106.8
(-3)
P 		106
C 294.1
(3)
P 		98.5
(-3)
P 		164.8
(-1)
P 		118.1
(-2.4)
P 		196.8
(0)
P 		119.7
(-2.3)
P 		196
avr 181.4
(3) 		127.9
(-2.5) 		170.8
(1.9) 		122.8
(-3) 		153.5
(0.1) 		124.2
(-2.9) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 50.1
(3)
P 		19.5
(-1.7)
P 		35.9
(0.8)
P 		11.3
(-3)
M 		39
B 44.2
(3)
P 		25.5
(-0.9)
A 		15.1
(-3)
P 		17.4
(-2.5)
M 		29
C 48.3
(3)
P 		36.6
(0.4)
P 		26.3
(-1.8)
P 		20.9
(-3)
P 		27
avr 47.5
(3) 		27.2
(-0.9) 		25.8
(-1.2) 		16.5
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 24.5
(-3)
A 		55.5
(3)
P 		29.4
(-2.1)
P 		34
(-1.2)
P 		42.9
(0.6)
P 		35.6
(-0.9)
P 		31
B 40.8
(-0.1)
P 		43
(0.5)
P 		51.6
(3)
P 		30.8
(-3)
P 		49.4
(2.4)
P 		39.8
(-0.4)
P 		21
C 109
(3)
P 		30.1
(-2.6)
P 		41.9
(-1.7)
P 		23.8
(-3)
P 		63.7
(-0.2)
P 		40.1
(-1.9)
P 		85
avr 58.1
(3) 		42.9
(-0.2) 		41
(-0.6) 		29.5
(-3) 		52
(1.7) 		38.5
(-1.1) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175950_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19584
Sequence Type Exemplar sequence
Representative Public ID H33H01.A NCBI
Target Description H33H01.A /REP_DB=WormBase Gene ID /WP=CE21006 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029572(11), NM_001029571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029572 NCBI Caenorhabditis elegans PDK-class protein kinase family member (pdk-1) (pdk-1) mRNA, complete cds. 11/11 None
NM_001029571 NCBI Caenorhabditis elegans PDK-class protein kinase family member (pdk-1) (pdk-1) mRNA, complete cds. 11/11 None
GENEFINDER00000041174 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1324462:1327488:1 11/11 None
H42K12.1b ENSEMBL cdna:known chromosome:CEL140:X:1321348:1327980:1 gene:H42K12.1 11/11 A 
H42K12.1a ENSEMBL cdna:known chromosome:CEL140:X:1321348:1327980:1 gene:H42K12.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041173 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1324461-1327488(+) 100.0 100.0
Public Domain and Genome References
Ensembl H42K12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK82905 Pdk-class protein kinase protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024743.1| PDK-class protein kinase family member (pdk-1) [Caenorhabditis elegans] gb|AAD42307.1| phophoinositide-dependent protein kinase 1a [Caenorhabditis elegans] 0.0
blast AAK82904 Pdk-class protein kinase protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024742.1| PDK-class protein kinase family member (pdk-1) [Caenorhabditis elegans] gb|AAD42308.1| phophoinositide-dependent protein kinase 1b [Caenorhabditis elegans] 0.0
blast CAE63571 Hypothetical protein CBG08059 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 7.0E-16
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 4.0E-16
hanks 1.8.7 AGC group; AGC VIII Flowering plant PVPK1 homologs; PsPK5 6.0E-65
hanks 1.8.7 AGC group; AGC VIII Flowering plant PVPK1 homologs; PsPK5 1.0E-65
hanks 1.2.6 AGC group; AGC I Diacylglycerol-activated/phospholipid-dependent protein kinase C (PKC) family; PKCe 7.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.2E-68
Pfam IPR000719 EMBL-EBI Protein kinase 2.2E-68
Pfam IPR000719 EMBL-EBI Protein kinase 5.3E-56
Sequence
Target Sequence 
>C. ELEGANS:175950_S_AT
atcgcggagacccatttgtttcggaaattgcaccacgcgccaattcggaagccgaaaaga
accgcgccgcacgtgcgcagaagctcgaagagcaacgtgtcaaaaacccattccacatct
tcaccaacaactcgctcattttgaaacaaggatatttggaaaagaagcgaggattgtttg
ccagacgccgaatgttcctgttgaccgaaggaccgcatctcttgtacattgatgtgccga
atcttgtgctcaaaggagaggtaccatggacgccgtgcatgcaggtggagctaaaaaact
cgggaactttctttatacatacgcccaaccgcgtctactacttgtttgatctcgaaaaga
aagcagatgagtggtgtaaggctatcaatgatgttcgcaagcggtactcggtgactatcg
aaaagacttttaactctgcgatgcgtgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCGGAGACCCATTTGTTTCGGA 443 37 971 Antisense
TTGTTTCGGAAATTGCACCACGCGC 416 703 986 Antisense
GAGCAACGTGTCAAAAACCCATTCC 196 391 1060 Antisense
GCGAGGATTGTTTGCCAGACGCCGA 252 291 1137 Antisense
CAGACGCCGAATGTTCCTGTTGACC 584 203 1152 Antisense
TGATGTGCCGAATCTTGTGCTCAAA 361 567 1200 Antisense
TACCATGGACGCCGTGCATGCAGGT 12 651 1232 Antisense
GGAACTTTCTTTATACATACGCCCA 515 525 1273 Antisense
CCGCGTCTACTACTTGTTTGATCTC 228 261 1299 Antisense
CGCAAGCGGTACTCGGTGACTATCG 597 249 1366 Antisense
GACTTTTAACTCTGCGATGCGTGAC 129 371 1395 Antisense
Sequence Source Affymetrix Proprietary Database