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[175949_at]

Description ZK112.4 /REP_DB=WormBase Gene ID /WP=CE00375 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 08      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 8.2
(-3)
A 		12.3
(-1.7)
A 		27.2
(3)
A 		13.7
(-1.3)
A 		19
B 7.5
(-2)
A 		8.6
(-1.4)
A 		5.5
(-3)
A 		17.3
(3)
A 		12
C 8
(-2.8)
A 		8.4
(-2.7)
A 		6.5
(-3)
A 		46.8
(3)
A 		40
avr 7.9
(-3) 		9.8
(-2.4) 		13.1
(-1.3) 		25.9
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 8.2
(-1.7)
A 		2.4
(-3)
A 		5.5
(-2.3)
A 		4.6
(-2.5)
A 		18.5
(0.6)
A 		29.6
(3)
A 		27
B 6
(-3)
A 		9.8
(-2.4)
A 		21.1
(-0.5)
A 		6.3
(-3)
A 		25
(0.1)
A 		42.7
(3)
A 		37
C 2.5
(-2.7)
A 		5.9
(-0)
A 		6.6
(0.5)
A 		9.8
(3)
A 		2.1
(-3)
A 		6.8
(0.7)
A 		8
avr 5.6
(-3) 		6
(-2.9) 		11.1
(-1.4) 		6.9
(-2.6) 		15.2
(-0.2) 		26.4
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3
(-1.8)
A 		2.7
(-2.2)
A 		7.1
(3)
A 		2
(-3)
A 		5
B 2.4
(-0.3)
A 		2.1
(-1)
A 		1.3
(-3)
A 		3.7
(3)
A 		2
C 2.6
(-2.7)
A 		2.4
(-2.9)
A 		2.3
(-3)
A 		7.9
(3)
A 		6
avr 2.7
(-2.1) 		2.4
(-3) 		3.6
(0.4) 		4.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.5
(-2.4)
A 		0.9
(-3)
A 		1.2
(-2.7)
A 		1.2
(-2.7)
A 		5.6
(1.5)
A 		7.2
(3)
A 		6
B 2.1
(-2.8)
A 		3.3
(-2.3)
A 		5.1
(-1.6)
A 		1.7
(-3)
A 		10.1
(0.5)
A 		15.9
(3)
A 		14
C 0.9
(-2.3)
A 		1.8
(1.1)
A 		1.7
(0.8)
A 		2
(1.9)
A 		0.7
(-3)
A 		2.3
(3)
A 		2
avr 1.5
(-3) 		2
(-2.6) 		2.7
(-2) 		1.6
(-2.9) 		5.5
(0.4) 		8.5
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175949_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7442
Sequence Type Exemplar sequence
Representative Public ID ZK112.4 NCBI
Target Description ZK112.4 /REP_DB=WormBase Gene ID /WP=CE00375 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066282 NCBI Caenorhabditis elegans ZK112.4 (ZK112.4) mRNA, complete cds. 11/11 None
ZK112.4 ENSEMBL cdna:known chromosome:CEL140:III:7729632:7729934:-1 gene:ZK112.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7729629-7729932(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK112.4
Entrez Gene 191227 Entrez gene
SwissProt P34613 EMBL-EBI
WormBase CE00375 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28187 Hypothetical protein ZK112.4 [Caenorhabditis elegans] ref|NP_498683.1| ZK112.4 [Caenorhabditis elegans] sp|P34613|YOG4_CAEEL Hypothetical protein ZK112.4 in chromosome III 6.0E-51
Sequence
Target Sequence 
>C. ELEGANS:175949_AT
gaccgccgacgattttattgaaacgtccgagcggtcggcgaccgcggaggagggcgctcg
cgcgcgcgcgaacttccgacttgtctctctggctttccagaaggaaacagactcatctct
ctttctcactctttctcagtgtcacatagaactgggcggtctcgagaaacattgtagggg
gagaattgagagaaagagagggcgagaggcattgcgcttggggcctggtactaaatacaa
ctgtccgtttcctatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCGCCGACGATTTTATTGAAACG 71 383 15 Antisense
TTGAAACGTCCGAGCGGTCGGCGAC 99 683 32 Antisense
GAGCGGTCGGCGACCGCGGAGGAGG 453 379 43 Antisense
ACTTGTCTCTCTGGCTTTCCAGAAG 104 105 93 Antisense
AGGAAACAGACTCATCTCTCTTTCT 461 55 116 Antisense
TCTCACTCTTTCTCAGTGTCACATA 476 613 138 Antisense
GTCACATAGAACTGGGCGGTCTCGA 154 461 155 Antisense
GCGGTCTCGAGAAACATTGTAGGGG 400 291 170 Antisense
GGCGAGAGGCATTGCGCTTGGGGCC 525 539 215 Antisense
GCGCTTGGGGCCTGGTACTAAATAC 622 281 228 Antisense
AAATACAACTGTCCGTTTCCTATCG 409 117 247 Antisense
Sequence Source Affymetrix Proprietary Database