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[175947_at]

Description ZK112.3 /REP_DB=WormBase Gene ID /WP=CE00374 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 28.1
(0.2)
A 		42.9
(3)
A 		30.5
(0.7)
A 		10.8
(-3)
A 		32
B 52.4
(2.9)
A 		53.3
(3)
A 		4.5
(-3)
A 		6.6
(-2.7)
A 		49
C 7
(-3)
A 		20.4
(-1.1)
A 		19.6
(-1.2)
A 		48.8
(3)
A 		42
avr 29.2
(0.2) 		38.9
(3) 		18.2
(-3) 		22.1
(-1.9) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 30
(3)
A 		28.8
(2.7)
A 		2
(-3)
A 		5.1
(-2.3)
A 		3.5
(-2.7)
A 		6.8
(-2)
A 		28
B 49.8
(3)
A 		35.4
(1.1)
A 		6.3
(-2.6)
A 		3.6
(-3)
A 		19.1
(-1)
A 		20.4
(-0.8)
A 		46
C 31.7
(1.7)
A 		32.5
(1.8)
A 		6.1
(-2.7)
A 		33.8
(2)
A 		39.3
(3)
A 		4.6
(-3)
A 		35
avr 37.2
(3) 		32.2
(2.1) 		4.8
(-3) 		14.2
(-1.3) 		20.6
(-0.1) 		10.6
(-1.9) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.2
(3)
A 		9.3
(2.4)
A 		8
(1.5)
A 		1.6
(-3)
A 		9
B 16.7
(3)
A 		13.2
(1.7)
A 		1
(-3)
A 		1.4
(-2.8)
A 		16
C 2.3
(-3)
A 		5.9
(0.7)
A 		6.8
(1.6)
A 		8.2
(3)
A 		6
avr 9.7
(3) 		9.5
(2.8) 		5.3
(-1.4) 		3.7
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 5.5
(0.1)
A 		10.3
(3)
A 		0.4
(-3)
A 		1.3
(-2.5)
A 		1.1
(-2.6)
A 		1.6
(-2.3)
A 		10
B 17.3
(3)
A 		11.8
(1)
A 		1.5
(-2.8)
A 		0.9
(-3)
A 		7.8
(-0.5)
A 		7.6
(-0.5)
A 		16
C 11.8
(2.5)
A 		9.9
(1.5)
A 		1.5
(-3)
A 		6.8
(-0.2)
A 		12.7
(3)
A 		1.6
(-2.9)
A 		11
avr 11.5
(3) 		10.7
(2.5) 		1.1
(-3) 		3
(-1.9) 		7.2
(0.5) 		3.6
(-1.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175947_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7342
Sequence Type Exemplar sequence
Representative Public ID ZK112.3 NCBI
Target Description ZK112.3 /REP_DB=WormBase Gene ID /WP=CE00374 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066281(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066281 NCBI Caenorhabditis elegans ZK112.3 (ZK112.3) mRNA, complete cds. 11/11 None
ZK112.3 ENSEMBL cdna:known chromosome:CEL140:III:7726095:7727781:1 gene:ZK112.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003620 7/11 Cross Hyb Matching Probes None
SNAP00000003589 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7726092-7727779(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK112.3
Entrez Gene 191226 Entrez gene
SwissProt P34612 EMBL-EBI
WormBase CE00374 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28186 Hypothetical protein ZK112.3 [Caenorhabditis elegans] ref|NP_498682.1| ZK112.3 [Caenorhabditis elegans] sp|P34612|YOG3_CAEEL Hypothetical protein ZK112.3 in chromosome III 9.0E-66
blast CAE66867 Hypothetical protein CBG12244 [Caenorhabditis briggsae] 8.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498682.1 1 13-35
ZK112.3 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:175947_AT
ttatatttttaccatctcatccacctgtttctcttttttgtcacattagggactggtggt
accaagtactcattattgaacatgaccattagcattcaaccatatgggaaagcgaagcgt
acgcaattagtcatagtctatgttgagtcagctagggaagtatcaagtgactttgagtat
ggaagaatcaaaaaaaaacgtgaaatgagcgaatcggagtcattgggtgggagcagtgcg
tcaacgacagccggaagcgacgaatacaccatgtcgcagattttcggtgctgccgggcgt
cctattccactctcgacgttcggtacagcaattccaaactcttggggatcagccgtatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATATTTTTACCATCTCATCCACC 358 679 55 Antisense
ACCTGTTTCTCTTTTTTGTCACATT 50 89 77 Antisense
GGGACTGGTGGTACCAAGTACTCAT 24 495 103 Antisense
GAACATGACCATTAGCATTCAACCA 73 351 132 Antisense
GAAGCGTACGCAATTAGTCATAGTC 96 339 168 Antisense
GTCATTGGGTGGGAGCAGTGCGTCA 23 467 273 Antisense
TGCGTCAACGACAGCCGGAAGCGAC 33 585 291 Antisense
GACGAATACACCATGTCGCAGATTT 295 379 313 Antisense
TGTCGCAGATTTTCGGTGCTGCCGG 42 557 326 Antisense
CACTCTCGACGTTCGGTACAGCAAT 465 195 362 Antisense
CAAACTCTTGGGGATCAGCCGTATC 671 191 389 Antisense
Sequence Source Affymetrix Proprietary Database