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[175945_at]

Description Y73B3B.D /REP_DB=WormBase Gene ID /WP=CE26597 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 94      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.8
(-2.2)
A 		5.2
(-3)
A 		6.4
(-1.3)
A 		9.5
(3)
A 		4
B 4.6
(-3)
A 		6.6
(3)
A 		5.9
(0.9)
A 		4.7
(-2.7)
A 		2
C 7.9
(-0.8)
A 		8.1
(-0.7)
A 		3.1
(-3)
A 		16.1
(3)
A 		13
avr 6.1
(-1.8) 		6.6
(-1.2) 		5.1
(-3) 		10.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.9
(-0.4)
A 		3
(-3)
A 		5.4
(-2)
A 		7.2
(-1.2)
A 		16.8
(3)
A 		7
(-1.3)
A 		14
B 3.8
(-3)
A 		4.5
(-2.6)
A 		4.6
(-2.6)
A 		13.6
(2.1)
A 		15.3
(3)
A 		15
(2.8)
A 		12
C 3.8
(-3)
A 		5.9
(-1.3)
A 		10.9
(2.6)
A 		5.4
(-1.7)
A 		8.8
(0.9)
A 		11.4
(3)
A 		8
avr 5.5
(-2.3) 		4.5
(-3) 		7
(-1.4) 		8.7
(-0.2) 		13.6
(3) 		11.1
(1.4) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.1
(3)
A 		1.1
(-3)
A 		1.7
(0.6)
A 		1.4
(-1.2)
A 		1
B 1.5
(2)
A 		1.6
(3)
A 		1.4
(1)
A 		1
(-3)
A 		1
C 2.6
(2.6)
A 		2.3
(1.5)
A 		1.1
(-3)
A 		2.7
(3)
A 		2
avr 2.1
(3) 		1.7
(-0.4) 		1.4
(-3) 		1.7
(-0.4) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.6
(-2.3)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		1.8
(-2)
A 		5.1
(3)
A 		1.7
(-2.1)
A 		4
B 1.3
(-2.8)
A 		1.5
(-2.5)
A 		1.1
(-3)
A 		3.6
(-0.1)
A 		6.2
(3)
A 		5.6
(2.3)
A 		5
C 1.4
(-2.3)
A 		1.8
(-1.4)
A 		2.8
(0.8)
A 		1.1
(-3)
A 		2.9
(1)
A 		3.8
(3)
A 		3
avr 1.4
(-3) 		1.5
(-2.8) 		1.7
(-2.5) 		2.2
(-1.5) 		4.7
(3) 		3.7
(1.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175945_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19621
Sequence Type Exemplar sequence
Representative Public ID Y73B3B.D NCBI
Target Description Y73B3B.D /REP_DB=WormBase Gene ID /WP=CE26597 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075648 NCBI Caenorhabditis elegans Y73B3B.2 (Y73B3B.2) mRNA, complete cds. 11/11 None
SNAP00000035181 ENSEMBL cdna:SNAP chromosome:CEL140:X:209109:215586:-1 11/11 None
GENEFINDER00000035184 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:214697:215586:-1 11/11 None
Y73B3B.2 ENSEMBL cdna:known chromosome:CEL140:X:214697:215575:-1 gene:Y73B3B.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033623 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12133433-12134313(+) 97.79 97.79
chrX:214696-215575(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B3B.2
Entrez Gene 190641 Entrez gene
SwissProt Q95XE0 EMBL-EBI
WormBase CE26597 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39373 Hypothetical protein Y73B3B.1 [Caenorhabditis elegans] ref|NP_508051.1| Y73B3B.1 [Caenorhabditis elegans] 0.0
blast AAK39374 Hypothetical protein Y73B3B.2 [Caenorhabditis elegans] ref|NP_508049.1| Y73B3B.2 [Caenorhabditis elegans] 1.0E-140
blast AAK39374 Hypothetical protein Y73B3B.2 [Caenorhabditis elegans] ref|NP_508049.1| Y73B3B.2 [Caenorhabditis elegans] 1.0E-136
blast CAB55010 Hypothetical protein Y57A10A.5 [Caenorhabditis elegans] ref|NP_496585.1| Y57A10A.5 [Caenorhabditis elegans] 1.0E-110
blast CAA99796 Hypothetical protein C47E8.8 [Caenorhabditis elegans] emb|CAB57906.1| Hypothetical protein C47E8.8 [Caenorhabditis elegans] ref|NP_506629.1| C47E8.8 [Caenorhabditis elegans] 2.0E-63
blast CAA99796 Hypothetical protein C47E8.8 [Caenorhabditis elegans] emb|CAB57906.1| Hypothetical protein C47E8.8 [Caenorhabditis elegans] ref|NP_506629.1| C47E8.8 [Caenorhabditis elegans] 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 3.9E-11
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 3.2E-24
Pfam IPR006570 EMBL-EBI SPK 6.1E-40
Pfam IPR006570 EMBL-EBI SPK 2.3E-66
Pfam IPR001214 EMBL-EBI Nuclear protein SET 3.9E-11
Sequence
Target Sequence 
>C. ELEGANS:175945_AT
gaatgtcacagcgtcctaatttcaaaatcccccgtatacaccagagctctccgtgcacca
cgagatctcaagccgggcgagtcaattgtgatgattcgaggattttgtgcatttcatcat
gaaattcaaccagatcacagaagtcagagatatctattcacatacggtcctgtctatttg
gatgctcgcgcgatgtcaaaaaatccgggaaaatttgtccgcagaagctgcattccgaat
agttatcttagatgtggaagaactgattcagaattctatctgattatcgtcgcaaaggaa
ttcattcgaaatggagttgagattactatcgattttaatgctgatgtcttcccattgtgt
tctcctttagaatgtattatgcactcgatggatcgtgggaattgtcgaaagaatggtggt
tatattggaccgccgaagcattttccttcaaccatttctccaatcaatccgaagccatca
caacctcagttcgatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTCACAGCGTCCTAATTTCAA 677 331 127 Antisense
TCTCCGTGCACCACGAGATCTCAAG 392 611 174 Antisense
GAGATCTCAAGCCGGGCGAGTCAAT 141 397 188 Antisense
TTCACATACGGTCCTGTCTATTTGG 434 685 283 Antisense
ATTTGGATGCTCGCGCGATGTCAAA 510 17 302 Antisense
TTGTCCGCAGAAGCTGCATTCCGAA 339 709 341 Antisense
AATGCTGATGTCTTCCCATTGTGTT 549 165 463 Antisense
TATTGGACCGCCGAAGCATTTTCCT 175 665 549 Antisense
GAAGCATTTTCCTTCAACCATTTCT 265 341 561 Antisense
CCAATCAATCCGAAGCCATCACAAC 563 277 586 Antisense
GCCATCACAACCTCAGTTCGATGAC 165 281 600 Antisense
Sequence Source Affymetrix Proprietary Database