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[175943_at]

Description C02D5.2 /REP_DB=WormBase Gene ID /WP=CE00034 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 62      6grp_total > 81      4grp_total > 61      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 452.8
(3)
P 		392.6
(1.3)
P 		383.8
(1)
P 		242.8
(-3)
P 		210
B 472.9
(3)
P 		445
(2.2)
P 		398.3
(0.8)
P 		273.5
(-3)
P 		199
C 446.2
(3)
P 		416.1
(1.5)
P 		418.6
(1.6)
P 		327.9
(-3)
P 		118
avr 457.3
(3) 		417.9
(1.7) 		400.2
(1.1) 		281.4
(-3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 523
1 2 3 4 5 6 range
A 332.2
(-2.3)
P 		413.4
(-0.8)
P 		377.2
(-1.5)
P 		622.5
(3)
P 		454.5
(-0.1)
P 		292.6
(-3)
P 		330
B 376.3
(-0.9)
P 		469.1
(0.8)
P 		442.2
(0.3)
P 		589.2
(3)
P 		555.3
(2.4)
P 		257.9
(-3)
P 		331
C 388.6
(-2)
P 		473.8
(-0.9)
P 		481.7
(-0.8)
P 		780.9
(3)
P 		443.9
(-1.3)
P 		307.4
(-3)
P 		474
avr 365.7
(-1.7) 		452.1
(-0.4) 		433.7
(-0.7) 		664.2
(3) 		484.6
(0.2) 		286
(-3) 		378
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 164.9
(3)
P 		85.2
(-0.7)
P 		100.3
(0)
P 		35.5
(-3)
P 		129
B 150.8
(3)
P 		109.9
(0.3)
P 		92.3
(-0.8)
P 		58.3
(-3)
P 		93
C 147.7
(3)
P 		119.6
(1.2)
P 		145.9
(2.9)
P 		55.3
(-3)
P 		92
avr 154.5
(3) 		104.9
(0.2) 		112.8
(0.6) 		49.7
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 61.2
(-3)
P 		147
(2.3)
P 		82.1
(-1.7)
P 		157.9
(3)
P 		137.2
(1.7)
P 		71.3
(-2.4)
P 		97
B 130.9
(-1.4)
P 		156.1
(-0.2)
P 		107.4
(-2.5)
P 		156.1
(-0.2)
P 		225.6
(3)
P 		96.2
(-3)
P 		129
C 144
(1.6)
P 		144.6
(1.6)
P 		122.6
(-0.8)
P 		157
(3)
P 		143.6
(1.5)
P 		102.9
(-3)
P 		54
avr 112
(-1.3) 		149.2
(1.5) 		104
(-1.9) 		157
(2.1) 		168.8
(3) 		90.1
(-3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6088
Sequence Type Exemplar sequence
Representative Public ID C02D5.2 NCBI
Target Description C02D5.2 /REP_DB=WormBase Gene ID /WP=CE00034 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066483 NCBI Caenorhabditis elegans C02D5.2 (C02D5.2) mRNA, complete cds. 11/11 None
GENEFINDER00000012229 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8552491:8559546:1 9/11 None
SNAP00000012227 ENSEMBL cdna:SNAP chromosome:CEL140:III:8557438:8558885:1 11/11 None
C02D5.2 ENSEMBL cdna:known chromosome:CEL140:III:8557239:8559098:1 gene:C02D5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8557233-8558880(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02D5.2
Entrez Gene 176203 Entrez gene
SwissProt P34276 EMBL-EBI
WormBase CE00034 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18648_AT gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein at
Protein Similarities
Method ID Description E-Value
blast AAA27914 Hypothetical protein C02D5.2 [Caenorhabditis elegans] ref|NP_498884.1| C02D5.2 [Caenorhabditis elegans] sp|P34276|YKJ2_CAEEL Hypothetical protein C02D5.2 in chromosome III 0.0
blast CAE71236 Hypothetical protein CBG18106 [Caenorhabditis briggsae] 1.0E-127
blast AAA27914 Hypothetical protein C02D5.2 [Caenorhabditis elegans] ref|NP_498884.1| C02D5.2 [Caenorhabditis elegans] sp|P34276|YKJ2_CAEEL Hypothetical protein C02D5.2 in chromosome III 1.0E-127
blast AAA27914 Hypothetical protein C02D5.2 [Caenorhabditis elegans] ref|NP_498884.1| C02D5.2 [Caenorhabditis elegans] sp|P34276|YKJ2_CAEEL Hypothetical protein C02D5.2 in chromosome III 1.0E-119
blast CAE71236 Hypothetical protein CBG18106 [Caenorhabditis briggsae] 1.0E-104
blast CAE71236 Hypothetical protein CBG18106 [Caenorhabditis briggsae] 1.0E-102
blast AAO12454 Hypothetical protein C02D5.3 [Caenorhabditis elegans] ref|NP_871705.2| C02D5.3 [Caenorhabditis elegans] sp|P34277|YKJ3_CAEEL Hypothetical protein C02D5.3 in chromosome III 1.0E-101
blast CAA85467 Hypothetical protein ZK669.2 [Caenorhabditis elegans] ref|NP_495668.1| ZK669.2 [Caenorhabditis elegans] 8.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 4.1E-59
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.5E-7
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 3.2E-6
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.1E-13
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 4.1E-59
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 4.1E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498884.1 3 13-32,37-59,87-104
C02D5.2 3 13-32,37-59,87-104
Sequence
Target Sequence 
>C. ELEGANS:175943_AT
atgagccaaaagcaggacccacgataaaagagcctgtagagaatatagttaaattggacg
tttatatggaagcacagtgtccggatacatctagatttttccgtcaacaacttaaaaaag
cgtgggatattctaggaaggctaaatcgaatcgaattgaatgtaattccatttggaaaag
cgaggtgtacagagaaaggaaacgatttcgaatgtcaatgtcagcatggtccgacagaat
gtcagattaatcaattaatgaattgtgtcattgatcgatttgggtttccacatagatatt
tgccaggtgttttgtgtatgcagggaaaatattcattagatgaggcaatgaaatgtgtta
ctgagaattatccatctgaatatgaaagaatgcgtgaatgtgcatcaggaactcgaggtc
gccgccttcttgctctttccggacagaaaactgcatcactaactccagcaattgacttca
ttccctggattgttattaatggttcacgtaactcggatgctctttatgatctaacacaga
atgtctgtgaagcaatgcaaccaatgccatctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCCAAAAGCAGGACCCACGAT 343 43 380 Antisense
GAAGCACAGTGTCCGGATACATCTA 134 341 448 Antisense
GATACATCTAGATTTTTCCGTCAAC 636 423 463 Antisense
GAATGTCAATGTCAGCATGGTCCGA 650 331 589 Antisense
GTCATTGATCGATTTGGGTTTCCAC 638 467 646 Antisense
TGTGCATCAGGAACTCGAGGTCGCC 580 555 778 Antisense
CTTCTTGCTCTTTCCGGACAGAAAA 306 221 805 Antisense
AAACTGCATCACTAACTCCAGCAAT 591 127 827 Antisense
AGCAATTGACTTCATTCCCTGGATT 466 75 846 Antisense
ATGGTTCACGTAACTCGGATGCTCT 229 51 878 Antisense
AAGCAATGCAACCAATGCCATCTGC 58 151 929 Antisense
Sequence Source Affymetrix Proprietary Database