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[175942_s_at]

Description Y105E8B.X /REP_DB=WormBase Gene ID /WP=CE25162 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_high1_10_10 > 75      6grp_total > 66      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 210
(3)
P 		117.5
(-3)
A 		141.6
(-1.4)
A 		145.1
(-1.2)
M 		93
B 253.9
(3)
M 		148.2
(-3)
A 		157.3
(-2.5)
A 		195.8
(-0.3)
P 		106
C 142.5
(-2)
A 		127.8
(-3)
A 		128.1
(-3)
A 		216.3
(3)
P 		89
avr 202.1
(3) 		131.2
(-3) 		142.3
(-2.1) 		185.7
(1.6) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 185.1
(-3)
P 		213.6
(-1.8)
P 		248.1
(-0.4)
P 		333.2
(3)
P 		228.4
(-1.2)
P 		288
(1.2)
P 		148
B 201.4
(-1.5)
P 		276
(0.9)
P 		186
(-2.1)
P 		312
(2.1)
P 		157.3
(-3)
P 		338.6
(3)
P 		181
C 220.9
(-1.7)
P 		306.4
(1.9)
P 		188.5
(-3)
M 		212.9
(-2)
P 		199.7
(-2.5)
P 		332.5
(3)
P 		144
avr 202.5
(-2.6) 		265.3
(0.4) 		207.5
(-2.4) 		286
(1.4) 		195.1
(-3) 		319.7
(3) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 76.5
(3)
P 		25.5
(-2.5)
A 		37
(-1.3)
A 		21.2
(-3)
M 		55
B 81
(3)
M 		36.6
(-3)
A 		36.5
(-3)
A 		41.7
(-2.3)
P 		45
C 47.2
(3)
A 		36.8
(-2.8)
A 		44.7
(1.6)
A 		36.5
(-3)
P 		11
avr 68.2
(3) 		33
(-3) 		39.4
(-1.9) 		33.1
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 34.1
(-3)
P 		76
(2)
P 		54
(-0.6)
P 		84.5
(3)
P 		68.9
(1.1)
P 		70.1
(1.3)
P 		50
B 70.1
(-1.2)
P 		91.9
(0.5)
P 		45.2
(-3)
P 		82.6
(-0.2)
P 		63.9
(-1.6)
P 		126.3
(3)
P 		81
C 81.9
(0.4)
P 		93.5
(1.4)
P 		48
(-2.5)
M 		42.8
(-3)
P 		64.6
(-1.1)
P 		111.3
(3)
P 		69
avr 62
(-1.6) 		87.1
(1.3) 		49.1
(-3) 		70
(-0.7) 		65.8
(-1.1) 		102.6
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175942_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18793
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.X NCBI
Target Description Y105E8B.X /REP_DB=WormBase Gene ID /WP=CE25162 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170953(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170953 NCBI Caenorhabditis elegans Y105E8A.21 (Y105E8A.21) mRNA, complete cds. 11/11 None
SNAP00000013350 ENSEMBL cdna:SNAP chromosome:CEL140:I:14507939:14526833:-1 11/11 None
GENEFINDER00000013510 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14507939:14518657:-1 11/11 None
Y105E8A.21.1 ENSEMBL cdna:known chromosome:CEL140:I:14507845:14518672:-1 gene:Y105E8A.21 11/11 None
Y105E8A.21.2 ENSEMBL cdna:known chromosome:CEL140:I:14507939:14518670:-1 gene:Y105E8A.21 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14507869-14518588(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.21
Entrez Gene 173313 Entrez gene
SwissProt Q9NEX6 EMBL-EBI
WormBase CE25162 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC48140 Hypothetical protein Y105E8A.21 [Caenorhabditis elegans] ref|NP_740949.1| Y105E8A.21 [Caenorhabditis elegans] 0.0
blast CAE72596 Hypothetical protein CBG19785 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175942_S_AT
atctgatcacacagcttttccgtatccgaatgctaccaacttaacctatgtgcattgtga
cattgatacgatgacgatgattttggtcccgactggaaatacccatcaacttctgacatg
ggacgtagcaatgtgtccggcagttggaactctgttgtcatcaggaattgacggacgtct
tgtcgcatcagcaaccggccgattcctaggaaacatgcgacattcctactttgcaaatcg
gaatgtgatggctctgaagcgacgaagaatcttgaaagaatctcaaacaatggaagaata
tctaaaagaagtgaagatggaaggatctgctgaaggatcaacctcaacctcgacgacaaa
aatctcagatgacaagatcaatgaaccattggaagagagcatcacagagcacacggaagt
ttgtcagaagatgtggctcgatgtgcaattcgatgagatctttgagccaacacgcccgga
attttcgtgtcgagaccaacgaatcgagtcgctgaactgtgtggatggaacgacgagtcg
ggattggccagtgagcttcaccggaggagaagctggactcttgtttgcagtttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGATCACACAGCTTTTCCGTAT 165 35 2190 Antisense
TTTCCGTATCCGAATGCTACCAACT 684 669 2206 Antisense
GCTACCAACTTAACCTATGTGCATT 525 301 2221 Antisense
TGACGATGATTTTGGTCCCGACTGG 200 567 2261 Antisense
GTCCGGCAGTTGGAACTCTGTTGTC 489 475 2324 Antisense
GAATTGACGGACGTCTTGTCGCATC 1 323 2354 Antisense
GAAACATGCGACATTCCTACTTTGC 82 357 2399 Antisense
GCTGAAGGATCAACCTCAACCTCGA 315 297 2518 Antisense
AGCCAACACGCCCGGAATTTTCGTG 293 83 2654 Antisense
TCGGGATTGGCCAGTGAGCTTCACC 56 607 2727 Antisense
AGCTGGACTCTTGTTTGCAGTTTCT 180 81 2760 Antisense
Sequence Source Affymetrix Proprietary Database