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[175939_s_at]

Description C30A5.3 /REP_DB=WormBase Gene ID /WP=CE00092 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 78      6grp_total > 78      4grp_total > 53      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 596
1 2 3 4 range
A 1688.6
(3)
P 		1593.7
(1.6)
P 		1544.8
(0.9)
P 		1273.2
(-3)
P 		415
B 1685.6
(3)
P 		1516.5
(-0.1)
P 		1458.9
(-1.1)
P 		1354.9
(-3)
P 		331
C 1522
(3)
P 		1366.8
(0.8)
P 		1362.8
(0.8)
P 		1092.4
(-3)
P 		430
avr 1632.1
(3) 		1492.3
(0.9) 		1455.5
(0.3) 		1240.2
(-3) 		392

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1529
1 2 3 4 5 6 range
A 1596.3
(-1.4)
P 		1684.8
(-1.1)
P 		1191.7
(-3)
P 		1415.9
(-2.1)
P 		1596.5
(-1.4)
P 		2712.5
(3)
P 		1521
B 1376.4
(-1.4)
P 		1241.4
(-2.5)
P 		1183.2
(-3)
P 		1532.3
(-0.2)
P 		1528.2
(-0.2)
P 		1927.1
(3)
P 		744
C 1281.2
(-2.9)
P 		1271.8
(-3)
P 		1317.5
(-2.7)
P 		1353.4
(-2.4)
P 		1730.2
(0.3)
P 		2093.6
(3)
P 		822
avr 1418
(-1.9) 		1399.3
(-2) 		1230.8
(-3) 		1433.9
(-1.8) 		1618.3
(-0.7) 		2244.4
(3) 		1014
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 614.8
(3)
P 		345.9
(-0.8)
P 		403.8
(0)
P 		186.4
(-3)
P 		428
B 537.5
(3)
P 		374.5
(-0.9)
P 		338
(-1.8)
P 		288.7
(-3)
P 		249
C 503.8
(3)
P 		393
(0.9)
P 		475
(2.5)
P 		184.2
(-3)
P 		320
avr 552
(3) 		371.1
(-0.3) 		405.6
(0.4) 		219.8
(-3) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 459
1 2 3 4 5 6 range
A 294.3
(-2.5)
P 		599.2
(2.1)
P 		259.5
(-3)
P 		359.1
(-1.5)
P 		481.7
(0.3)
P 		660.4
(3)
P 		401
B 478.9
(-0.3)
P 		413.2
(-1.2)
P 		287.3
(-3)
P 		405.8
(-1.4)
P 		620.9
(1.6)
P 		718.6
(3)
P 		431
C 474.9
(-0.2)
P 		388.1
(-1.4)
P 		335.3
(-2.1)
P 		272.2
(-3)
P 		559.9
(1)
P 		700.8
(3)
P 		429
avr 416
(-1.2) 		466.8
(-0.4) 		294
(-3) 		345.7
(-2.2) 		554.2
(0.9) 		693.3
(3) 		399
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175939_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6276
Sequence Type Exemplar sequence
Representative Public ID C30A5.3 NCBI
Target Description C30A5.3 /REP_DB=WormBase Gene ID /WP=CE00092 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066397(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066397 NCBI Caenorhabditis elegans C30A5.3 (C30A5.3) mRNA, complete cds. 11/11 None
SNAP00000019641 ENSEMBL cdna:SNAP chromosome:CEL140:III:8225021:8225938:1 11/11 None
GENEFINDER00000019646 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8225021:8225938:1 11/11 None
C30A5.3.1 ENSEMBL cdna:known chromosome:CEL140:III:8225012:8226288:1 gene:C30A5.3 11/11 None
C30A5.3.2 ENSEMBL cdna:known chromosome:CEL140:III:8225013:8226284:1 gene:C30A5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8224859-8225934(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30A5.3
Entrez Gene 176158 Entrez gene
SwissProt P34349 EMBL-EBI
WormBase CE32154 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605213_AT similar to preimplantation protein 3 cfa
CANINE:1589992_S_AT similar to preimplantation protein 3 cfa
CANINE_2:CFA.18360.1.S1_AT similar to preimplantation protein 3 cfa
CANINE_2:CFA.2714.1.A1_AT similar to preimplantation protein 3 cfa
CANINE_2:CFAAFFX.17057.1.S1_S_AT similar to preimplantation protein 3 cfa
DROSOPHILA_2:1627426_AT dm
DROSGENOME1:153993_AT dm
CHICKEN:GGA.15412.1.S1_AT preimplantation protein 3 gga
CHICKEN:GGA.16491.1.S1_A_AT preimplantation protein 3 gga
CHICKEN:GGA.16491.2.S1_AT preimplantation protein 3 gga
CHICKEN:GGA.16491.3.S1_A_AT preimplantation protein 3 gga
CHICKEN:GGA.16491.3.S1_AT preimplantation protein 3 gga
HG-U133_PLUS_2:202919_AT preimplantation protein 3 hs
HG-U133A:202919_AT preimplantation protein 3 hs
HG-U133A_2:202919_AT preimplantation protein 3 hs
HU35KSUBA:RC_AA504251_AT preimplantation protein 3 hs
HU35KSUBA:AA448456_AT preimplantation protein 3 hs
HU35KSUBA:AA313990_AT preimplantation protein 3 hs
HU35KSUBD:RC_AA348925_S_AT preimplantation protein 3 hs
HG-U133A:202918_S_AT preimplantation protein 3 hs
HG-U133_PLUS_2:202918_S_AT preimplantation protein 3 hs
HG-U133A_2:202918_S_AT preimplantation protein 3 hs
U133_X3P:G7661623_3P_AT preimplantation protein 3 hs
U133_X3P:G4929658_3P_A_AT preimplantation protein 3 hs
HG-U95AV2:38698_AT preimplantation protein 3 hs
HU35KSUBA:RC_AA459269_AT Preimplantation protein 3 hs
HG-U133_PLUS_2:243845_AT Preimplantation protein 3 hs
HG-U133B:243845_AT Preimplantation protein 3 hs
HG-U95B:42575_AT Preimplantation protein 3 hs
HG-U95E:70351_AT Preimplantation protein 3 hs
HU35KSUBD:RC_AA487049_AT Preimplantation protein 3 hs
U133_X3P:HS.205173.0.A1_3P_AT Preimplantation protein 3 hs
MG-U74BV2:164801_AT preimplantation protein 3 mm
MOE430A:1423168_AT preimplantation protein 3 mm
MOUSE430A_2:1423168_AT preimplantation protein 3 mm
MOUSE430_2:1423168_AT preimplantation protein 3 mm
MOE430A:1423167_AT preimplantation protein 3 mm
MOUSE430A_2:1423167_AT preimplantation protein 3 mm
MOUSE430_2:1423167_AT preimplantation protein 3 mm
MU19KSUBA:TC25266_AT Preimplantation protein 3 (Prei3), mRNA mm
MU19KSUBB:TC26420_AT Preimplantation protein 3 (Prei3), mRNA mm
MU19KSUBC:TC40157_AT Preimplantation protein 3 (Prei3), mRNA mm
RG-U34C:RC_AI234949_AT preimplantation protein 3 rn
RG-U34C:RC_AI175513_AT preimplantation protein 3 rn
RAE230A:1387089_AT preimplantation protein 3 rn
RAT230_2:1387089_AT preimplantation protein 3 rn
Protein Similarities
Method ID Description E-Value
blast AAB59173 Hypothetical protein C30A5.3 [Caenorhabditis elegans] ref|NP_498798.2| C30A5.3 [Caenorhabditis elegans] sp|P34349|YK83_CAEEL Hypothetical protein C30A5.3 in chromosome III 1.0E-124
blast CAE70187 Hypothetical protein CBG16661 [Caenorhabditis briggsae] 6.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR005301 EMBL-EBI Mob1/phocein family 1.6E-88
Sequence
Target Sequence 
>C. ELEGANS:175939_S_AT
tggtcgccgctggcttttgaggaaatggatagtgctctgaacattcaacagtacatccaa
cagacgattaaagcgaatccagctgatgttgccacaattttaactcctccattggatcaa
gatgaaggagtgtggaagtacgaacatcttcgtcaattttgcatcgagctcaatggctta
gctcttctcctccaaagagaatgtatcccagaaacctgccaacaaatgaccgccaccgaa
caatggattttcctgtgtgccgctcataagaacccaaatgagtgtccagcgatcgattac
acacgtcatacactagacggagccgccaccttgctcaactcgaataagtattttccaagc
cgagtcaacatcaaagaaatttcaatttcaaagctgggatctgtagctcgtcgcgtctat
cgcatattttcgcacgcattcttccatcatcgtaagctgttcgacgagtttgaaaatgaa
actcatctctgcaagcgattcaccacatacgtgtcgaagtacaatctgatgcaacaagag
catcttattgttcccattctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCGCCGCTGGCTTTTGAGGAAA 2 553 199 Antisense
AAGCGAATCCAGCTGATGTTGCCAC 534 149 269 Antisense
TGTTGCCACAATTTTAACTCCTCCA 418 561 285 Antisense
TCCTGTGTGCCGCTCATAAGAACCC 164 595 449 Antisense
GTCCAGCGATCGATTACACACGTCA 411 477 482 Antisense
GCCACCTTGCTCAACTCGAATAAGT 72 281 523 Antisense
GTATTTTCCAAGCCGAGTCAACATC 537 451 546 Antisense
GTCTATCGCATATTTTCGCACGCAT 619 469 613 Antisense
GAAACTCATCTCTGCAAGCGATTCA 370 357 676 Antisense
AAGCGATTCACCACATACGTGTCGA 427 149 691 Antisense
AGAGCATCTTATTGTTCCCATTCTT 610 69 735 Antisense
Sequence Source Affymetrix Proprietary Database