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[175938_s_at] --- /// Protein phosphatase

Description C30A5.4 /REP_DB=WormBase Gene ID /WP=CE00095 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 33      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 7.6
(-3)
A 		62.6
(3)
A 		61.5
(2.9)
A 		33
(-0.2)
A 		55
B 2.5
(-3)
A 		55.4
(3)
A 		44.7
(1.8)
A 		41.1
(1.4)
A 		53
C 48.6
(3)
A 		8.3
(-2.9)
A 		7.7
(-3)
A 		38
(1.4)
A 		41
avr 19.6
(-3) 		42.1
(3) 		38
(1.9) 		37.4
(1.7) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 13.2
(-2.6)
A 		5.7
(-3)
A 		11.6
(-2.7)
A 		26.3
(-2)
A 		74
(0.3)
A 		131.7
(3)
A 		126
B 9.3
(-3)
A 		33.8
(-1.7)
A 		17.9
(-2.5)
A 		32.8
(-1.8)
A 		73.9
(0.4)
A 		122.1
(3)
P 		113
C 27.5
(-1.6)
A 		37.8
(-0.9)
A 		6.1
(-3)
A 		7
(-2.9)
A 		78.6
(1.8)
A 		96.4
(3)
P 		90
avr 16.7
(-2.7) 		25.8
(-2.2) 		11.9
(-3) 		22
(-2.4) 		75.5
(0.6) 		116.7
(3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.8
(-3)
A 		13.6
(1.9)
A 		16.1
(3)
A 		4.8
(-2.1)
A 		13
B 0.8
(-3)
A 		13.7
(3)
A 		10.4
(1.5)
A 		8.8
(0.7)
A 		13
C 16.1
(3)
A 		2.4
(-3)
A 		2.7
(-2.9)
A 		6.4
(-1.2)
A 		14
avr 6.6
(-3) 		9.9
(3) 		9.7
(2.6) 		6.7
(-2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 2.4
(-2.9)
A 		2
(-3)
A 		2.5
(-2.9)
A 		6.7
(-2.1)
A 		22.3
(1)
A 		32.1
(3)
A 		30
B 3.2
(-3)
A 		11.3
(-1.9)
A 		4.4
(-2.8)
A 		8.7
(-2.2)
A 		30
(0.8)
A 		45.5
(3)
P 		42
C 10.2
(-1.3)
A 		11.5
(-1)
A 		1.5
(-3)
A 		1.4
(-3)
A 		25.4
(1.7)
A 		32.3
(3)
P 		31
avr 5.3
(-2.6) 		8.3
(-2) 		2.8
(-3) 		5.6
(-2.5) 		25.9
(1.1) 		36.6
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175938_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6174
Sequence Type Exemplar sequence
Representative Public ID C30A5.4 NCBI
Target Description C30A5.4 /REP_DB=WormBase Gene ID /WP=CE00095 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066265(11), NM_066396(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066265 NCBI Caenorhabditis elegans R13A5.11 (R13A5.11) mRNA, complete cds. 11/11 A 
NM_066396 NCBI Caenorhabditis elegans C30A5.4 (C30A5.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000019650 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8222142:8224656:1 10/11 None
SNAP00000019640 ENSEMBL cdna:SNAP chromosome:CEL140:III:8222291:8223708:1 11/11 None
R13A5.11 ENSEMBL cdna:known chromosome:CEL140:III:7591511:7593122:-1 gene:R13A5.11 11/11 None
C30A5.4 ENSEMBL cdna:known chromosome:CEL140:III:8222142:8223708:1 gene:C30A5.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8222137-8223704(+) 100.0 100.0
chrIII:7591520-7593120(-) 96.39 96.39
Public Domain and Genome References
Gene Title
Protein phosphatase
Ensembl R13A5.11
C30A5.4
Entrez Gene 176075 Entrez gene
183037 Entrez gene
SwissProt P34350 EMBL-EBI
Q95Y86 EMBL-EBI
WormBase CE00095 Wormbase
CE34584 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK84462 Hypothetical protein R13A5.11 [Caenorhabditis elegans] ref|NP_498666.2| R13A5.11 [Caenorhabditis elegans] 0.0
blast AAB59174 Hypothetical protein C30A5.4 [Caenorhabditis elegans] ref|NP_498797.1| C30A5.4 [Caenorhabditis elegans] sp|P34350|YK84_CAEEL Hypothetical protein C30A5.4 in chromosome III 0.0
blast CAE64441 Hypothetical protein CBG09147 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.7E-34
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 8.0E-9
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.4E-15
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 6.8E-4
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.4E-15
Sequence
Target Sequence 
>C. ELEGANS:175938_S_AT
atgttcattctattgggacgtcctcctgagacagtttatgttttcactgaatgcgtgact
tcgattccaaagtgtggagaggagatttgggctttgttccagcgttgttttaacaatctt
ccaatctccgctttgatcgctacaaagattctatgcatgcatggtggattgtctcctgct
ctgacatgtcttgatgaacttcgcaatcacccgaaaccaattcgtaacccatttcgtgga
attgtgaatgacatgctctgggctgatccggatccatctgtttttgaatggaagacaagt
tcacgtggatctggcttcaccttcggaacaaatgtgattgatgacgtttgtaaacgtctt
ggtgtcgagcttatcatccgtgctcaccaaatgtgtttcgatggttattgggtattgagt
ggacggaagcttatcaccatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCATTCTATTGGGACGTCCTC 102 47 538 Antisense
GGACGTCCTCCTGAGACAGTTTATG 684 521 553 Antisense
GAATGCGTGACTTCGATTCCAAAGT 273 331 586 Antisense
ATGCATGGTGGATTGTCTCCTGCTC 650 43 694 Antisense
TCTCCTGCTCTGACATGTCTTGATG 358 609 709 Antisense
TGAACTTCGCAATCACCCGAAACCA 8 575 732 Antisense
GAATGACATGCTCTGGGCTGATCCG 206 331 783 Antisense
GATCCGGATCCATCTGTTTTTGAAT 362 415 802 Antisense
GTCTTGGTGTCGAGCTTATCATCCG 630 467 893 Antisense
TATCATCCGTGCTCACCAAATGTGT 344 659 909 Antisense
GTGGACGGAAGCTTATCACCATCTT 432 489 956 Antisense
Sequence Source Affymetrix Proprietary Database