[Home] | [Total List]

[175937_at]

Description C30A5.4 /REP_DB=WormBase Gene ID /WP=CE00095 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 07      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 25.5
(3)
A 		1.8
(-3)
A 		21.1
(1.9)
A 		8.4
(-1.3)
A 		24
B 17.3
(3)
A 		5.9
(-3)
A 		13.2
(0.8)
A 		16.4
(2.5)
A 		11
C 7.3
(-2.1)
A 		2.9
(-3)
A 		4.2
(-2.7)
A 		32.8
(3)
A 		30
avr 16.7
(2) 		3.5
(-3) 		12.8
(0.6) 		19.2
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 1.9
(-3)
A 		26.4
(1)
A 		5.1
(-2.5)
A 		10.1
(-1.7)
A 		39
(3)
A 		17.1
(-0.5)
A 		37
B 11.6
(-1.7)
A 		39.7
(3)
A 		7.3
(-2.5)
A 		4.1
(-3)
A 		27.6
(1)
A 		9.4
(-2.1)
A 		36
C 3.9
(-2.8)
A 		14.5
(-0.9)
A 		2.6
(-3)
A 		5.3
(-2.5)
A 		26.2
(1.1)
A 		37.1
(3)
A 		35
avr 5.8
(-2.8) 		26.9
(2.1) 		5
(-3) 		6.5
(-2.7) 		30.9
(3) 		21.2
(0.8) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.3
(3)
A 		0.4
(-3)
A 		5.5
(0.4)
A 		1.2
(-2.5)
A 		9
B 5.5
(3)
A 		1.4
(-3)
A 		3.1
(-0.5)
A 		3.5
(0.1)
A 		4
C 2.4
(-1)
A 		0.8
(-3)
A 		1.5
(-2.1)
A 		5.5
(3)
A 		5
avr 5.7
(3) 		0.9
(-3) 		3.4
(0.1) 		3.4
(0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.4
(-3)
A 		9.4
(1.7)
A 		1.1
(-2.6)
A 		2.6
(-1.8)
A 		11.8
(3)
A 		4.2
(-1)
A 		11
B 4
(-1.6)
A 		13.2
(3)
A 		1.8
(-2.7)
A 		1.1
(-3)
A 		11.2
(2)
A 		3.5
(-1.8)
A 		12
C 1.5
(-2.6)
A 		4.4
(-1.1)
A 		0.7
(-3)
A 		1.1
(-2.8)
A 		8.5
(1)
A 		12.4
(3)
A 		12
avr 2
(-2.5) 		9
(2) 		1.2
(-3) 		1.6
(-2.7) 		10.5
(3) 		6.7
(0.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175937_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6174
Sequence Type Exemplar sequence
Representative Public ID C30A5.4 NCBI
Target Description C30A5.4 /REP_DB=WormBase Gene ID /WP=CE00095 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066396(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066396 NCBI Caenorhabditis elegans C30A5.4 (C30A5.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000019650 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8222142:8224656:1 10/11 None
SNAP00000019640 ENSEMBL cdna:SNAP chromosome:CEL140:III:8222291:8223708:1 10/11 None
C30A5.4 ENSEMBL cdna:known chromosome:CEL140:III:8222142:8223708:1 gene:C30A5.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066265 1/11 Cross Hyb Matching Probes A 
R13A5.11 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8222137-8223704(+) 100.0 100.0
chrIII:7591520-7593120(-) 96.39 96.39
Public Domain and Genome References
Gene Title
Ensembl C30A5.4
Entrez Gene 183037 Entrez gene
SwissProt P34350 EMBL-EBI
WormBase CE00095 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB59174 Hypothetical protein C30A5.4 [Caenorhabditis elegans] ref|NP_498797.1| C30A5.4 [Caenorhabditis elegans] sp|P34350|YK84_CAEEL Hypothetical protein C30A5.4 in chromosome III 0.0
blast AAK84462 Hypothetical protein R13A5.11 [Caenorhabditis elegans] ref|NP_498666.2| R13A5.11 [Caenorhabditis elegans] 0.0
blast CAE64441 Hypothetical protein CBG09147 [Caenorhabditis briggsae] 1.0E-173
blast CAE64441 Hypothetical protein CBG09147 [Caenorhabditis briggsae] 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 8.0E-9
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.4E-15
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 6.8E-4
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.4E-15
Sequence
Target Sequence 
>C. ELEGANS:175937_AT
atgttttcactgaatgcgtgacttcgattccaaagtgtggagaggagatttgggctttgt
tccagcgttgttttaacaatcttccaatctccgctttgatcgctacaaagattctatgca
tgcatggtggattgtctcctgctctgacatgtcttgatgaacttcgcaatcacccgaaac
caattcgtaacccatttcgtggaattgtgaatgacatgctctgggctgatccggatccat
ctgtttttgaatggaagacaagttcacgtggatctggcttcaccttcggaacaaatgtga
ttgatgacgtttgtaaacgtcttggtgtcgagcttatcatccgtgctcaccaaatgtgtt
tcgatggttattgggtattgagtggacggaagcttatcaccatcttctctgctcccatgt
actgcaacttctacaagaacactggatgtgtgttgaaagtagacgagacgttggggattc
agacggtcgcatttgttccagaatcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTTTCACTGAATGCGTGACTTC 641 45 575 Antisense
GCTTTGTTCCAGCGTTGTTTTAACA 413 301 628 Antisense
TCCAGCGTTGTTTTAACAATCTTCC 373 587 635 Antisense
CAATTCGTAACCCATTTCGTGGAAT 66 179 755 Antisense
TTCGTAACCCATTTCGTGGAATTGT 613 33 758 Antisense
GAAGACAAGTTCACGTGGATCTGGC 465 339 828 Antisense
CAAGTTCACGTGGATCTGGCTTCAC 233 185 833 Antisense
TAGACGAGACGTTGGGGATTCAGAC 371 653 1034 Antisense
GACGTTGGGGATTCAGACGGTCGCA 662 377 1041 Antisense
TTCAGACGGTCGCATTTGTTCCAGA 71 689 1052 Antisense
CGGTCGCATTTGTTCCAGAATCGGA 642 243 1058 Antisense
Sequence Source Affymetrix Proprietary Database