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[175936_at]

Description Y73B3A.V /REP_DB=WormBase Gene ID /WP=CE26589 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 70      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 27.4
(2.2)
A 		3.4
(-3)
A 		31.1
(3)
A 		13.3
(-0.9)
A 		28
B 8
(-3)
A 		17.8
(-1.2)
A 		41.4
(3)
A 		10.8
(-2.5)
A 		33
C 31.5
(0.9)
A 		13.9
(-2.5)
A 		11
(-3)
A 		42.9
(3)
A 		32
avr 22.3
(1) 		11.7
(-3) 		27.8
(3) 		22.3
(1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 43
(2.1)
A 		15.6
(-3)
A 		22.6
(-1.7)
A 		25.5
(-1.2)
A 		48.1
(3)
A 		20.5
(-2.1)
A 		33
B 30
(1.2)
A 		22.5
(-0.7)
A 		36.3
(2.7)
A 		37.3
(3)
A 		23.2
(-0.6)
A 		13.5
(-3)
A 		24
C 18.1
(-2.7)
A 		30
(0.2)
A 		36.7
(1.8)
A 		38.7
(2.3)
A 		16.8
(-3)
A 		41.7
(3)
A 		25
avr 30.4
(1.2) 		22.7
(-3) 		31.9
(2) 		33.8
(3) 		29.4
(0.6) 		25.2
(-1.6) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10
(3)
A 		0.7
(-3)
A 		8.1
(1.8)
A 		1.9
(-2.2)
A 		9
B 2.6
(-2.8)
A 		4.4
(-1.3)
A 		9.6
(3)
A 		2.3
(-3)
A 		7
C 10.4
(3)
A 		4
(-2.8)
A 		3.8
(-3)
A 		7.2
(0.1)
A 		7
avr 7.7
(3) 		3
(-3) 		7.2
(2.4) 		3.8
(-2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.9
(-1.1)
A 		5.5
(-2.6)
A 		4.9
(-3)
A 		6.5
(-2)
A 		14.5
(3)
A 		5
(-2.9)
A 		10
B 10.4
(3)
A 		7.5
(-0.2)
A 		8.8
(1.2)
A 		9.9
(2.4)
A 		9.4
(1.9)
A 		5
(-3)
A 		5
C 6.7
(-2.1)
A 		9.2
(-0.3)
A 		9.3
(-0.2)
A 		7.8
(-1.3)
A 		5.4
(-3)
A 		13.9
(3)
A 		9
avr 8.3
(-0.8) 		7.4
(-3) 		7.7
(-2.3) 		8.1
(-1.3) 		9.8
(3) 		8
(-1.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175936_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19602
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.V NCBI
Target Description Y73B3A.V /REP_DB=WormBase Gene ID /WP=CE26589 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022358 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:122329:126838:-1 None
SNAP00000022310 ENSEMBL cdna:SNAP chromosome:CEL140:X:122333:122647:-1 None
SNAP00000015395 ENSEMBL cdna:SNAP chromosome:CEL140:V:15594307:15594673:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:122328-124528(-) 98.93 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39369 Hypothetical protein Y73B3A.6 [Caenorhabditis elegans] ref|NP_508069.2| Y73B3A.6 [Caenorhabditis elegans] 1.0E-175
blast NP_496989 R06A4.3 [Caenorhabditis elegans] 1.0E-174
blast AAB66015 Hypothetical protein T05H4.9 [Caenorhabditis elegans] 1.0E-107
blast CAB03802 Hypothetical protein B0391.10 [Caenorhabditis elegans] ref|NP_506875.1| B0391.10 [Caenorhabditis elegans] 7.0E-26
blast CAB03802 Hypothetical protein B0391.10 [Caenorhabditis elegans] ref|NP_506875.1| B0391.10 [Caenorhabditis elegans] 4.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR004906 EMBL-EBI Tc5 transposase 9.5E-35
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 2.6E-23
Pfam IPR004875 EMBL-EBI CENP-B protein 1.7E-6
Sequence
Target Sequence 
>C. ELEGANS:175936_AT
taaactcggcgagtacgacactccacaataacgtttcgttatcggctgagcgcgaatgca
gcgccgaatatcatattggcggaaattcaagagtcaaaacgagaagctcatcaatctact
gcaactatcgtcaattcatatgctccagctcaagcggatacctgtttccaatgaatttct
ccgctgaattagactttgacgaagatcgtgtctatgaaatgctttgctcggatgatgaga
atacgactaattattctgacgagatcaatgcgataatagatgcgaatatgcggagtctat
gggtatttcaattaaccctccaactacagccgccggaacaaaaattaaaaacgaagattc
aagcaaaaacgcggaagaaactgtcgataccactacttcgtatgctcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACTCGGCGAGTACGACACTCCA 685 637 41 Antisense
GACACTCCACAATAACGTTTCGTTA 585 347 57 Antisense
GGCTGAGCGCGAATGCAGCGCCGAA 302 537 84 Antisense
GCAGCGCCGAATATCATATTGGCGG 462 313 98 Antisense
GAAGCTCATCAATCTACTGCAACTA 125 343 143 Antisense
GCTCAAGCGGATACCTGTTTCCAAT 30 303 188 Antisense
GAATTTCTCCGCTGAATTAGACTTT 598 325 213 Antisense
ATTTCAATTAACCCTCCAACTACAG 695 1 345 Antisense
TCCAACTACAGCCGCCGGAACAAAA 473 587 359 Antisense
CGCGGAAGAAACTGTCGATACCACT 699 239 410 Antisense
CGATACCACTACTTCGTATGCTCGG 100 249 425 Antisense
Sequence Source Affymetrix Proprietary Database