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[175935_at]

Description Y73B3A.I /REP_DB=WormBase Gene ID /WP=CE26577 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 66      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 8.7
(-3)
A 		16.4
(-0.6)
A 		28.3
(3)
A 		11.1
(-2.3)
A 		20
B 6.3
(0.8)
A 		3.8
(-3)
A 		7.8
(3)
A 		6.5
(1.1)
A 		4
C 5.1
(-2.8)
A 		8.5
(-2.5)
A 		2.1
(-3)
A 		76.6
(3)
A 		75
avr 6.7
(-3) 		9.6
(-2.3) 		12.7
(-1.5) 		31.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 5
(-2.7)
A 		25.5
(0.1)
A 		6.2
(-2.5)
A 		2.9
(-3)
A 		3.8
(-2.9)
A 		46.4
(3)
A 		44
B 3.5
(-3)
A 		11
(3)
A 		6.3
(-0.8)
A 		6.1
(-0.9)
A 		7.5
(0.2)
A 		3.7
(-2.8)
A 		8
C 5.2
(-2.8)
A 		4.8
(-2.9)
A 		8.8
(-1.8)
A 		26.4
(3)
A 		9.5
(-1.6)
A 		4.3
(-3)
A 		22
avr 4.6
(-3) 		13.8
(1.1) 		7.1
(-1.9) 		11.8
(0.2) 		6.9
(-2) 		18.1
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.2
(-1.3)
A 		3.6
(-0.9)
A 		7.4
(3)
A 		1.6
(-3)
A 		6
B 2
(3)
A 		0.9
(-3)
A 		1.8
(1.9)
A 		1.4
(-0.3)
A 		1
C 1.7
(-2.5)
A 		2.4
(-2.2)
A 		0.7
(-3)
A 		12.9
(3)
A 		12
avr 2.3
(-3) 		2.3
(-3) 		3.3
(-1) 		5.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-2.9)
A 		9.1
(1.8)
A 		1.3
(-2.7)
A 		0.7
(-3)
A 		1.2
(-2.7)
A 		11.3
(3)
A 		11
B 1.2
(-3)
A 		3.7
(3)
A 		1.5
(-2.3)
A 		1.6
(-2)
A 		3
(1.3)
A 		1.4
(-2.5)
A 		3
C 1.9
(-2.2)
A 		1.5
(-2.8)
A 		2.2
(-1.8)
A 		5.3
(3)
A 		3.1
(-0.4)
A 		1.4
(-3)
A 		4
avr 1.3
(-3) 		4.8
(3) 		1.7
(-2.3) 		2.5
(-0.9) 		2.4
(-1.1) 		4.7
(2.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175935_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19607
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.I NCBI
Target Description Y73B3A.I /REP_DB=WormBase Gene ID /WP=CE26577 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075669(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075669 NCBI Caenorhabditis elegans Y73B3A.14 (Y73B3A.14) mRNA, complete cds. 11/11 None
SNAP00000022309 ENSEMBL cdna:SNAP chromosome:CEL140:X:119803:122155:1 9/11 None
GENEFINDER00000022360 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:119803:122155:1 10/11 None
Y73B3A.14 ENSEMBL cdna:known chromosome:CEL140:X:119803:121146:1 gene:Y73B3A.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:119802-121146(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B3A.14
Entrez Gene 190632 Entrez gene
SwissProt Q95XF2 EMBL-EBI
WormBase CE26577 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39352 Hypothetical protein Y73B3A.14 [Caenorhabditis elegans] ref|NP_508070.1| Y73B3A.14 [Caenorhabditis elegans] 1.0E-101
blast AAK39352 Hypothetical protein Y73B3A.14 [Caenorhabditis elegans] ref|NP_508070.1| Y73B3A.14 [Caenorhabditis elegans] 3.0E-86
blast AAK39352 Hypothetical protein Y73B3A.14 [Caenorhabditis elegans] ref|NP_508070.1| Y73B3A.14 [Caenorhabditis elegans] 7.0E-64
blast CAB03801 Hypothetical protein B0391.9 [Caenorhabditis elegans] ref|NP_506876.1| B0391.9 [Caenorhabditis elegans] 9.0E-39
blast CAB03801 Hypothetical protein B0391.9 [Caenorhabditis elegans] ref|NP_506876.1| B0391.9 [Caenorhabditis elegans] 1.0E-22
blast CAB03801 Hypothetical protein B0391.9 [Caenorhabditis elegans] ref|NP_506876.1| B0391.9 [Caenorhabditis elegans] 4.0E-22
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 4.0E-19
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 2.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-7
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.6E-24
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-31
Sequence
Target Sequence 
>C. ELEGANS:175935_AT
tgccagcctatatcattcgagaagttgctagcaatgttagtttcatcaagcgagaaaaac
tagacaaaggagtcgaatatttccgcaaggcgatcgataacacttcggaaaaccttttgt
tggatggagtcgacagggaaatacgttctagaagagttcaagccagtctgagcagtttag
aaactagagaaatctatcttggaggaatttgctttaacgaattgacttcgattctgccac
atttcaaagcaggaacactcaaagaaatttctttggacctaataaacaaggctatcggag
acgcatcacaacaagaacggaatgcgaagccacctccaacagctgaaaaactactgacaa
atctgaagttttatacaactaaaatgttccaagttatctgcaaatgtcgaacattcgtat
ttgggtatttcccggccatcgattttttcttccctgaagaggtcgcgagagtcttccagc
cagactacgaaggtggttcagaaggatcgatccgttaccgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCAGCCTATATCATTCGAGAAGT 148 587 14 Antisense
GGAGTCGAATATTTCCGCAAGGCGA 274 517 82 Antisense
GCAAGGCGATCGATAACACTTCGGA 484 321 98 Antisense
GAGTTCAAGCCAGTCTGAGCAGTTT 117 399 167 Antisense
TGACTTCGATTCTGCCACATTTCAA 373 569 236 Antisense
AAGGCTATCGGAGACGCATCACAAC 232 161 301 Antisense
AAGAACGGAATGCGAAGCCACCTCC 238 151 326 Antisense
AAGCCACCTCCAACAGCTGAAAAAC 578 147 340 Antisense
GTTCCAAGTTATCTGCAAATGTCGA 468 439 399 Antisense
GTCGAACATTCGTATTTGGGTATTT 167 475 419 Antisense
AGAAGGATCGATCCGTTACCGCAAT 433 73 513 Antisense
Sequence Source Affymetrix Proprietary Database