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[175934_at]

Description Y73B3A.U /REP_DB=WormBase Gene ID /WP=CE26588 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 44      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 2.6
(-2.3)
A
11.2
(2.1)
A
1.3
(-3)
A
12.9
(3)
A
12
B 15.6
(3)
A
6.3
(-1.4)
A
2.8
(-3)
A
5.1
(-1.9)
A
13
C 5.9
(-1.9)
A
6.4
(-1.8)
A
1.5
(-3)
A
26
(3)
A
25
avr 8
(-0.1)
8
(-0.1)
1.9
(-3)
14.7
(3)
13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 29.4
(3)
A
11.8
(-1.2)
A
21.4
(1.1)
A
4.1
(-3)
A
18.3
(0.4)
A
9.9
(-1.6)
A
25
B 2
(-2.6)
A
1.2
(-3)
A
12
(2.3)
A
6.2
(-0.5)
A
1.8
(-2.7)
A
13.4
(3)
A
12
C 1.2
(-3)
A
19.5
(3)
A
6.2
(-1.4)
A
3.7
(-2.2)
A
9.6
(-0.2)
A
6.4
(-1.3)
A
18
avr 10.9
(1.4)
10.8
(1.3)
13.2
(3)
4.7
(-3)
9.9
(0.7)
9.9
(0.7)
9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1
(-1)
A
2.4
(3)
A
0.3
(-3)
A
1.9
(1.6)
A
2
B 5
(3)
A
1.6
(-1.7)
A
0.7
(-3)
A
1.1
(-2.4)
A
4
C 2
(-0.7)
A
1.9
(-0.8)
A
0.5
(-3)
A
4.4
(3)
A
4
avr 2.7
(3)
2
(1.1)
0.5
(-3)
2.5
(2.5)
2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 5.4
(2.9)
A
4.2
(1.3)
A
4.7
(1.9)
A
1
(-3)
A
5.5
(3)
A
2.4
(-1.1)
A
5
B 0.7
(-2.6)
A
0.4
(-3)
A
2.9
(0.3)
A
1.6
(-1.4)
A
0.7
(-2.6)
A
5
(3)
A
5
C 0.4
(-3)
A
6
(3)
A
1.6
(-1.7)
A
0.7
(-2.7)
A
3.1
(-0.1)
A
2.1
(-1.2)
A
6
avr 2.2
(-0.3)
3.5
(3)
3.1
(2)
1.1
(-3)
3.1
(2)
3.2
(2.3)
2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175934_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19597
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.U NCBI
Target Description Y73B3A.U /REP_DB=WormBase Gene ID /WP=CE26588 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
GENEFINDER00000022358 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:122329:126838:-1 11/11 None
SNAP00000022311 ENSEMBL cdna:SNAP chromosome:CEL140:X:124594:127783:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036079 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:124593-126838(-) 17.15 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_496989 R06A4.3 [Caenorhabditis elegans] 0.0
blast AAK39369 Hypothetical protein Y73B3A.6 [Caenorhabditis elegans] ref|NP_508069.2| Y73B3A.6 [Caenorhabditis elegans] 0.0
blast AAK39369 Hypothetical protein Y73B3A.6 [Caenorhabditis elegans] ref|NP_508069.2| Y73B3A.6 [Caenorhabditis elegans] 1.0E-175
blast NP_496989 R06A4.3 [Caenorhabditis elegans] 1.0E-174
blast AAB66015 Hypothetical protein T05H4.9 [Caenorhabditis elegans] 1.0E-146
blast AAB66015 Hypothetical protein T05H4.9 [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR004906 EMBL-EBI Tc5 transposase 9.5E-35
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 2.6E-23
Pfam IPR004875 EMBL-EBI CENP-B protein 1.7E-6
Pfam IPR004906 EMBL-EBI Tc5 transposase 1.0E-126
Pfam IPR004875 EMBL-EBI CENP-B protein 1.7E-6
Sequence
Target Sequence
>C. ELEGANS:175934_AT
gcaaagataccagaagcatacctacaatgagttcaataattccgtcgtcctgcacgagtg
gcaagtgaccaacgaacttctcgccgacgtttgttgcaattccaaaggcgaaggaggaca
cggagcaatggccagtggagattggcgacgagcgttacagaggaataa


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GCAAAGATACCAGAAGCATACCTAC 375 313 957 Antisense
GAAGCATACCTACAATGAGTTCAAT 480 341 969 Antisense
TGAGTTCAATAATTCCGTCGTCCTG 106 567 984 Antisense
TCGTCCTGCACGAGTGGCAAGTGAC 342 605 1001 Antisense
GGCAAGTGACCAACGAACTTCTCGC 554 533 1016 Antisense
TTCTCGCCGACGTTTGTTGCAATTC 549 693 1034 Antisense
GACGTTTGTTGCAATTCCAAAGGCG 596 377 1042 Antisense
CCAAAGGCGAAGGAGGACACGGAGC 281 271 1058 Antisense
GGACACGGAGCAATGGCCAGTGGAG 55 527 1072 Antisense
GTGGAGATTGGCGACGAGCGTTACA 414 489 1091 Antisense
GGCGACGAGCGTTACAGAGGAATAA 101 541 1100 Antisense
Sequence Source Affymetrix Proprietary Database