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[175933_at]

Description Y73B3A.Z /REP_DB=WormBase Gene ID /WP=CE26593 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 54      4grp_high_8_8 > 06      6grp_total > 36      4grp_total > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 394
1 2 3 4 range
A 56.9
(-2.3)
P 		53.6
(-2.4)
A 		31.1
(-3)
A 		248.2
(3)
P 		217
B 65.5
(-1.7)
P 		32.1
(-3)
A 		63.3
(-1.8)
P 		185
(3)
P 		153
C 71.8
(-2.6)
P 		47.7
(-3)
P 		77.6
(-2.5)
P 		424.9
(3)
P 		377
avr 64.7
(-2.5) 		44.5
(-3) 		57.3
(-2.7) 		286
(3) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 52.9
(-0.1)
A 		42.3
(-1.9)
A 		71.1
(3)
P 		57.8
(0.7)
M 		35.9
(-3)
P 		40
(-2.3)
P 		35
B 57.9
(1.5)
P 		49.8
(-0.2)
P 		47.1
(-0.7)
A 		36
(-3)
P 		36.3
(-2.9)
P 		65.1
(3)
P 		29
C 36.1
(-1)
M 		81.8
(3)
P 		13.4
(-3)
A 		22.8
(-2.2)
A 		37.6
(-0.9)
P 		50.5
(0.3)
P 		68
avr 49
(0.5) 		58
(3) 		43.9
(-1) 		38.9
(-2.4) 		36.6
(-3) 		51.9
(1.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 20.7
(-0.3)
P 		11.6
(-2.3)
A 		8.1
(-3)
A 		36.3
(3)
P 		28
B 20.9
(-0.5)
P 		7.9
(-3)
A 		14.7
(-1.7)
P 		39.4
(3)
P 		32
C 23.8
(-2)
P 		13.7
(-3)
P 		27.1
(-1.6)
P 		71.7
(3)
P 		58
avr 21.8
(-1.3) 		11.1
(-3) 		16.6
(-2.1) 		49.1
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.8
(-2.9)
A 		15
(2.5)
A 		15.5
(3)
P 		14.7
(2.2)
M 		10.8
(-1.9)
P 		9.7
(-3)
P 		6
B 20.2
(1.3)
P 		16.6
(-0.1)
P 		11.4
(-2.2)
A 		9.5
(-3)
P 		14.8
(-0.9)
P 		24.3
(3)
P 		15
C 13.4
(-0.2)
M 		25
(3)
P 		3.4
(-3)
A 		4.6
(-2.7)
A 		12.2
(-0.6)
P 		16.9
(0.7)
P 		22
avr 14.5
(0.2) 		18.9
(3) 		10.1
(-2.7) 		9.6
(-3) 		12.6
(-1.1) 		17
(1.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175933_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19593
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.Z NCBI
Target Description Y73B3A.Z /REP_DB=WormBase Gene ID /WP=CE26593 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075673(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075673 NCBI Caenorhabditis elegans Y73B3A.3 (Y73B3A.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000022355 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:84100:94978:-1 11/11 None
Y73B3A.3 ENSEMBL cdna:known chromosome:CEL140:X:84043:91245:-1 gene:Y73B3A.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000444 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022600 1/11 Cross Hyb Matching Probes None
GENEFINDER00000028410 1/11 Cross Hyb Matching Probes None
GENEFINDER00000040915 1/11 Cross Hyb Matching Probes None
SNAP00000022304 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:84099-87086(-) 71.17 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B3A.3
Entrez Gene 180380 Entrez gene
SwissProt Q95XE8 EMBL-EBI
WormBase CE27332 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39361 Hypothetical protein Y73B3A.3 [Caenorhabditis elegans] ref|NP_508074.1| Y73B3A.3 [Caenorhabditis elegans] 0.0
blast AAK39361 Hypothetical protein Y73B3A.3 [Caenorhabditis elegans] ref|NP_508074.1| Y73B3A.3 [Caenorhabditis elegans] 1.0E-160
blast AAU05544 Hypothetical protein M70.4 [Caenorhabditis elegans] ref|NP_500183.2| M70.4 [Caenorhabditis elegans] 1.0E-153
blast AAU05544 Hypothetical protein M70.4 [Caenorhabditis elegans] ref|NP_500183.2| M70.4 [Caenorhabditis elegans] 1.0E-137
blast CAE68202 Hypothetical protein CBG13870 [Caenorhabditis briggsae] 1.0E-135
blast CAE68202 Hypothetical protein CBG13870 [Caenorhabditis briggsae] 1.0E-122
Sequence
Target Sequence 
>C. ELEGANS:175933_AT
atgcgaataatcggtgtttgcacacaatacaccgcattttacgacattttgtacttgctt
tgttttcttgtgtttttcaccgatttttcccgtctgtctcgttatgaaaatcaggtactt
ttagcatctaaacagcatatgtgtcatgtttgggaaaaagtttgggttttttattcccgt
aatccatcatattacattgaccacttttaccgctacttgccgactgaattcacaattttt
tcacttggaaagtgttttagcatctgcaaaaagcaacaaaactacctaattaatacggaa
ttcgagacttctgaagaatatttgacacatttgaatcaactcgttcagaatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGAATAATCGGTGTTTGCACAC 595 41 481 Antisense
GTTTGCACACAATACACCGCATTTT 474 451 496 Antisense
TACACCGCATTTTACGACATTTTGT 519 641 508 Antisense
GACATTTTGTACTTGCTTTGTTTTC 162 371 523 Antisense
TTTTCCCGTCTGTCTCGTTATGAAA 548 677 565 Antisense
AAATCAGGTACTTTTAGCATCTAAA 430 117 588 Antisense
ACAGCATATGTGTCATGTTTGGGAA 33 107 612 Antisense
ACTTGCCGACTGAATTCACAATTTT 55 105 695 Antisense
TTCACAATTTTTTCACTTGGAAAGT 552 685 709 Antisense
TGGAAAGTGTTTTAGCATCTGCAAA 395 547 726 Antisense
ATTTGAATCAACTCGTTCAGAATAC 286 15 809 Antisense
Sequence Source Affymetrix Proprietary Database