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[175932_s_at]

Description Y73B3A.D /REP_DB=WormBase Gene ID /WP=CE26572 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 42      4grp_total > 16      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13066
1 2 3 4 range
A 27298.6
(-3)
P 		31591.4
(-0.8)
P 		32906.1
(-0.1)
P 		38944.7
(3)
P 		11646
B 29026.9
(-3)
P 		30159.8
(-1.9)
P 		32468.7
(0.3)
P 		35244.8
(3)
P 		6218
C 25879.2
(-3)
P 		27851.8
(-2)
P 		26899.9
(-2.5)
P 		38038.6
(3)
P 		12159
avr 27401.6
(-3) 		29867.7
(-1.5) 		30758.2
(-1) 		37409.4
(3) 		10008

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8781
1 2 3 4 5 6 range
A 27086.4
(3)
P 		23407.8
(-1.1)
P 		25267.6
(1)
P 		24656
(0.3)
P 		21670.4
(-3)
P 		24385.6
(0)
P 		5416
B 23241.7
(0.8)
P 		21823.7
(-0.3)
P 		26131.8
(3)
P 		22174.8
(-0)
P 		19246.9
(-2.3)
P 		18305.7
(-3)
P 		7826
C 22794.3
(-0.1)
P 		23225.9
(0.2)
P 		26868.6
(3)
P 		23423.1
(0.4)
P 		23531.6
(0.4)
P 		19064.1
(-3)
P 		7805
avr 24374.1
(1.1) 		22819.1
(-0.6) 		26089.3
(3) 		23418
(0.1) 		21483
(-2) 		20585.1
(-3) 		5504
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4239
1 2 3 4 range
A 9939.4
(3)
P 		6857.6
(-1.4)
P 		8602.3
(1.1)
P 		5700.7
(-3)
P 		4239
B 9256.5
(3)
P 		7448.8
(-3)
P 		7523.7
(-2.8)
P 		7510.7
(-2.8)
P 		1808
C 8566.7
(1.4)
P 		8007.6
(0.2)
P 		9375.4
(3)
P 		6413.9
(-3)
P 		2962
avr 9254.2
(3) 		7438
(-1) 		8500.5
(1.3) 		6541.8
(-3) 		2712

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3739
1 2 3 4 5 6 range
A 4993.2
(-3)
P 		8325
(3)
P 		5502.8
(-2.1)
P 		6253.4
(-0.7)
P 		6539.2
(-0.2)
P 		5937.1
(-1.3)
P 		3332
B 8087
(3)
P 		7264.2
(0.8)
P 		6345.6
(-1.7)
P 		5873.3
(-3)
P 		7819.8
(2.3)
P 		6826.1
(-0.4)
P 		2214
C 8448.9
(3)
P 		7086.9
(0.8)
P 		6838.5
(0.4)
P 		4710.4
(-3)
P 		7614.5
(1.7)
P 		6381.9
(-0.3)
P 		3739
avr 7176.4
(1.8) 		7558.7
(3) 		6229
(-1.1) 		5612.4
(-3) 		7324.5
(2.3) 		6381.7
(-0.6) 		1946
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175932_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19608
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.D NCBI
Target Description Y73B3A.D /REP_DB=WormBase Gene ID /WP=CE26572 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002391(10), NM_171316(11), NM_171904(11), NM_171610(11), NM_171609(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_002391 NCBI Caenorhabditis elegans rpl-7A, miscRNA. 10/11 None
NM_171316 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-7A) (rpl-7A) mRNA, complete cds. 11/11 A 
NM_171904 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-7A) (rpl-7A) mRNA, complete cds. 11/11 A 
NM_171610 NCBI Caenorhabditis elegans Y73B3A.18b (Y73B3A.18) mRNA, complete cds. 11/11 None
NM_171609 NCBI Caenorhabditis elegans Y73B3A.18a (Y73B3A.18) mRNA, complete cds. 11/11 None
SNAP00000027688 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4389169:4391633:-1 10/11 None
GENEFINDER00000027694 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4389169:4390622:-1 11/11 None
GENEFINDER00000022362 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:47998:60750:1 11/11 None
SNAP00000022300 ENSEMBL cdna:SNAP chromosome:CEL140:X:56516:60750:1 10/11 None
Y24D9A.4a.1 ENSEMBL cdna:known chromosome:CEL140:IV:4389128:4390595:-1 gene:Y24D9A.4 11/11 A 
Y24D9A.4a.2 ENSEMBL cdna:known chromosome:CEL140:IV:4389128:4390939:-1 gene:Y24D9A.4 11/11 A 
Y24D9A.4c ENSEMBL cdna:known chromosome:CEL140:IV:4389169:4390583:-1 gene:Y24D9A.4 11/11 A 
Y73B3A.18a ENSEMBL cdna:known chromosome:CEL140:X:57929:60752:1 gene:Y73B3A.18 11/11 None
Y73B3A.18b ENSEMBL cdna:known chromosome:CEL140:X:57929:60774:1 gene:Y73B3A.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:58837-60750(+) 71.86 90.08
chrIV:4389174-4390628(-) 70.36 70.36
Public Domain and Genome References
Ensembl Y24D9A.4
Y73B3A.18
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T18779 transposase containing protein - Caenorhabditis elegans 0.0
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast T32726 hypothetical protein C45H4.5 - Caenorhabditis elegans 0.0
blast AAM15612 Ribosomal protein, large subunit protein 7A, isoform c [Caenorhabditis elegans] ref|NP_741372.2| Ribosomal Protein, Large subunit family member (rpl-7A) [Caenorhabditis elegans] 1.0E-126
blast AAK84600 Ribosomal protein, large subunit protein 7A, isoform a [Caenorhabditis elegans] ref|NP_741371.2| Ribosomal Protein, Large subunit family member (rpl-7A) [Caenorhabditis elegans] sp|Q966C6|RL7A_CAEEL 60S ribosomal protein L7a 1.0E-124
blast AAK84600 Ribosomal protein, large subunit protein 7A, isoform a [Caenorhabditis elegans] ref|NP_741371.2| Ribosomal Protein, Large subunit family member (rpl-7A) [Caenorhabditis elegans] sp|Q966C6|RL7A_CAEEL 60S ribosomal protein L7a 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR004038 EMBL-EBI Ribosomal protein L7Ae/L30e/S12e/Gadd45 5.5E-26
Pfam IPR004038 EMBL-EBI Ribosomal protein L7Ae/L30e/S12e/Gadd45 1.9E-24
Pfam IPR004038 EMBL-EBI Ribosomal protein L7Ae/L30e/S12e/Gadd45 5.5E-26
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Pfam IPR004038 EMBL-EBI Ribosomal protein L7Ae/L30e/S12e/Gadd45 5.3E-7
Pfam IPR000719 EMBL-EBI Protein kinase 7.2E-6
Pfam IPR004038 EMBL-EBI Ribosomal protein L7Ae/L30e/S12e/Gadd45 9.2E-19
Sequence
Target Sequence 
>C. ELEGANS:175932_S_AT
ccgtcgtccatacaagatgcctagcaagaaggttatcaagaagaaagtcgccgctgttcc
ggcgcacattcgtgcccaaactcaagtccagaaggaagtgaagaacccacttttcgagaa
gagagctcgcaacttcaacatcggacaagacatccagccaaagaaggacgtcacccgatt
cgtcaaatggccaaagtacatccgtctccagcgtcaatccgctattctccagaagcgcct
gaaggttccaccaaccatcaaccagttcagaaccgctcttgacagccactccgccctctg
cagaaagtacaacgttccatacgccatcatcaagggaaaggcttccctcgcaaccgtcgt
ccgcagaaagactaccgccgctgttgctctcgtcgatgtcaacccagaagacaagtctgc
cctcaacaagctcgtcgagactgtcaacaacaacttcagcgagcgtcacgaggagatccg
caagcactggggaggaggtgtcatgtccgccaagtctgatgccaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTCGTCCATACAAGATGCCTAGC 416 265 306 Antisense
CAAGAAGAAAGTCGCCGCTGTTCCG 646 185 342 Antisense
TTCGTGCCCAAACTCAAGTCCAGAA 378 695 374 Antisense
AGCTCGCAACTTCAACATCGGACAA 471 79 429 Antisense
GTCACCCGATTCGTCAAATGGCCAA 72 467 475 Antisense
AATGGCCAAAGTACATCCGTCTCCA 266 161 491 Antisense
TCCAGAAGCGCCTGAAGGTTCCACC 563 587 533 Antisense
CAACCAGTTCAGAACCGCTCTTGAC 156 187 564 Antisense
ACAACTTCAGCGAGCGTCACGAGGA 61 113 755 Antisense
TGGGGAGGAGGTGTCATGTCCGCCA 643 553 793 Antisense
TGTCCGCCAAGTCTGATGCCAAGAA 431 557 809 Antisense
Sequence Source Affymetrix Proprietary Database