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[175930_s_at]

Description Y73B3A.S /REP_DB=WormBase Gene ID /WP=CE26579 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 34      4grp_total > 08      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 3.6
(-2.9)
A
3.1
(-3)
A
6.2
(-2.6)
A
47
(3)
A
44
B 4
(-3)
A
11.3
(-0.8)
A
24
(3)
A
4.9
(-2.7)
A
20
C 6
(-0.1)
A
2.2
(-3)
A
2.3
(-2.9)
A
10
(3)
A
8
avr 4.5
(-3)
5.5
(-2.6)
10.8
(-0.7)
20.6
(3)
16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 5.8
(3)
A
3.7
(-0.1)
A
4.6
(1.2)
A
2
(-2.6)
A
2.1
(-2.4)
A
1.7
(-3)
A
4
B 5.5
(1.3)
A
6.9
(3)
A
6.7
(2.8)
A
1.9
(-3)
A
3.7
(-0.8)
A
2.2
(-2.6)
A
5
C 4.4
(1.9)
A
4
(1.3)
A
5.1
(3)
A
2.6
(-0.8)
A
1.2
(-3)
A
1.6
(-2.4)
A
4
avr 5.2
(2.5)
4.9
(2)
5.5
(3)
2.2
(-2.4)
2.3
(-2.2)
1.8
(-3)
4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.3
(-2.4)
A
0.7
(-3)
A
1.6
(-2.1)
A
6.9
(3)
A
6
B 1.3
(-2.6)
A
2.8
(-0.7)
A
5.6
(3)
A
1
(-3)
A
5
C 2
(3)
A
0.6
(-3)
A
0.8
(-2.1)
A
1.7
(1.7)
A
1
avr 1.5
(-2.7)
1.4
(-3)
2.7
(1.3)
3.2
(3)
2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.1
(1.7)
A
1.3
(3)
A
1
(1)
A
0.5
(-2.3)
A
0.6
(-1.7)
A
0.4
(-3)
A
1
B 1.9
(1.7)
A
2.3
(3)
A
1.6
(0.7)
A
0.5
(-3)
A
1.5
(0.3)
A
0.8
(-2)
A
2
C 1.6
(3)
A
1.2
(1)
A
1.3
(1.5)
A
0.5
(-2.5)
A
0.4
(-3)
A
0.5
(-2.5)
A
1
avr 1.5
(2.5)
1.6
(3)
1.3
(1.4)
0.5
(-3)
0.8
(-1.4)
0.6
(-2.5)
1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175930_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19577
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.S NCBI
Target Description Y73B3A.S /REP_DB=WormBase Gene ID /WP=CE26579 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075666(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_075666 NCBI Caenorhabditis elegans Y73B3A.7 (Y73B3A.7) mRNA, complete cds. 11/11 None
Y73B3A.7 ENSEMBL cdna:known chromosome:CEL140:X:135793:138075:-1 gene:Y73B3A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022342 5/11 Cross Hyb Matching Probes None
SNAP00000022314 5/11 Cross Hyb Matching Probes None
SNAP00000022315 1/11 Cross Hyb Matching Probes None
SNAP00000022316 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022343 5/11 Cross Hyb Matching Probes None
SNAP00000022317 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:135014-137297(+) 95.47 100.0
chrX:135792-138075(-) 95.47 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B3A.7
Entrez Gene 190625 Entrez gene
SwissProt Q95XF5 EMBL-EBI
WormBase CE26579 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39357 Hypothetical protein Y73B3A.7 [Caenorhabditis elegans] ref|NP_508067.1| Y73B3A.7 [Caenorhabditis elegans] 1.0E-106
Sequence
Target Sequence
>C. ELEGANS:175930_S_AT
aatcgtgatcgaagcgtctctggtgttgcacaacaacaacgacaacaacaacaacaagaa
tcgaatgcagatgatcatggctcctcagctccggagaatccagatggtaagaaaatcaat
aatgggttatcgaggaaaaaggaagactgaccagcaattgaaaagcacgaataatccaac
ttcgtctcgtctccctttgaatacgaaaaacgtcgctcaagctctcggaggccgacttca
tattgacgagaccgccatcgatgcacttttcaaaaatggttcgaagagtgataggatttg
ggccgccatcgtcaaaggacaaaatcgtataatggagtccatgtatgaaagattcatgac
acctaaggatttaaaaaaggacaaactggccacgttgaattctcagtcgtgtgattcaat
gtgttgcttgctgacgtaccagtattcttactat


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
AATCGTGATCGAAGCGTCTCTGGTG 425 169 45 Antisense
GCGTCTCTGGTGTTGCACAACAACA 577 291 58 Antisense
GAATGCAGATGATCATGGCTCCTCA 246 331 107 Antisense
TCCTCAGCTCCGGAGAATCCAGATG 121 591 126 Antisense
ACGAATAATCCAACTTCGTCTCGTC 72 93 211 Antisense
GTCTCGTCTCCCTTTGAATACGAAA 369 471 228 Antisense
GAAAGATTCATGACACCTAAGGATT 549 359 391 Antisense
GACAAACTGGCCACGTTGAATTCTC 574 363 424 Antisense
AATTCTCAGTCGTGTGATTCAATGT 277 177 442 Antisense
AATGTGTTGCTTGCTGACGTACCAG 375 163 462 Antisense
GCTGACGTACCAGTATTCTTACTAT 385 295 474 Antisense
Sequence Source Affymetrix Proprietary Database