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[175928_at]

Description Y73B3A.L /REP_DB=WormBase Gene ID /WP=CE26580 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 76      4grp_total > 36      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 11.2
(-3)
A 		22.3
(0.1)
A 		12
(-2.8)
A 		32.8
(3)
A 		22
B 25.5
(0.5)
A 		40.3
(3)
A 		4.4
(-3)
A 		23.1
(0.1)
A 		36
C 41.5
(2.7)
A 		42.7
(3)
A 		32.2
(0.4)
A 		18.2
(-3)
A 		25
avr 26.1
(0.1) 		35.1
(3) 		16.2
(-3) 		24.7
(-0.3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 3.3
(-3)
A 		10.5
(-1.7)
A 		22.8
(0.5)
A 		7.4
(-2.3)
A 		36.6
(3)
A 		33.2
(2.4)
A 		33
B 3.5
(-3)
A 		13.1
(-1.6)
A 		18.5
(-0.9)
A 		18.5
(-0.9)
A 		21.6
(-0.4)
A 		45.9
(3)
P 		42
C 2.1
(-3)
A 		3.5
(-2.7)
A 		26.4
(2.1)
A 		19.5
(0.6)
A 		3.4
(-2.7)
A 		30.9
(3)
M 		29
avr 3
(-3) 		9
(-1.9) 		22.6
(0.5) 		15.1
(-0.8) 		20.5
(0.1) 		36.7
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.1
(0.5)
A 		4.8
(3)
A 		3.1
(-3)
A 		4.8
(3)
A 		2
B 8.1
(1.7)
A 		10
(3)
A 		1
(-3)
A 		4.9
(-0.4)
A 		9
C 13.7
(3)
A 		12.3
(2.2)
A 		11.2
(1.6)
A 		3.1
(-3)
A 		11
avr 8.6
(2.5) 		9
(3) 		5.1
(-2) 		4.3
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.6
(-3)
A 		3.7
(-1.2)
A 		5
(-0.5)
A 		1.9
(-2.3)
A 		11
(3)
A 		8.1
(1.3)
A 		10
B 1.2
(-3)
A 		4.4
(-1.8)
A 		4.5
(-1.8)
A 		4.9
(-1.6)
A 		8.8
(-0.1)
A 		17.1
(3)
P 		16
C 0.8
(-3)
A 		1.1
(-2.8)
A 		6.7
(0.7)
A 		3.9
(-1)
A 		1.1
(-2.8)
A 		10.3
(3)
M 		10
avr 0.9
(-3) 		3.1
(-1.8) 		5.4
(-0.5) 		3.6
(-1.5) 		7
(0.4) 		11.8
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175928_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19574
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.L NCBI
Target Description Y73B3A.L /REP_DB=WormBase Gene ID /WP=CE26580 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y73B3A.L
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y73B3A.L Y73B3A.L /REP_DB=WormBase Gene ID /WP=CE26580 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:137965-138984(+) 90.76 100.0
Sequence
Target Sequence 
>C. ELEGANS:175928_AT
gttcttcggcggcatactggagaatcgcctttacgtacgcgaagatacatcgttcgtcga
gacgccaaacaacattctgaccatctcggaggatcgcatctcgatgatgaagagatgtac
agagaatattgatggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTCGGCGGCATACTGGAGAAT 149 443 108 Antisense
ACTGGAGAATCGCCTTTACGTACGC 107 97 123 Antisense
GAATCGCCTTTACGTACGCGAAGAT 631 329 129 Antisense
ACGTACGCGAAGATACATCGTTCGT 565 91 140 Antisense
GACGCCAAACAACATTCTGACCATC 209 381 168 Antisense
CAAACAACATTCTGACCATCTCGGA 690 189 173 Antisense
ACATTCTGACCATCTCGGAGGATCG 385 103 179 Antisense
TGACCATCTCGGAGGATCGCATCTC 668 569 185 Antisense
TCTCGGAGGATCGCATCTCGATGAT 495 611 191 Antisense
GGAGGATCGCATCTCGATGATGAAG 327 515 195 Antisense
AGATGTACAGAGAATATTGATGGTC 243 65 220 Antisense
Sequence Source Affymetrix Proprietary Database