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[175926_s_at] F-box protein /// ---

Description Y73B3A.G /REP_DB=WormBase Gene ID /WP=CE26575 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 70      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 25.2
(3)
A 		3.6
(-2.5)
A 		1.7
(-3)
A 		2.6
(-2.8)
A 		24
B 17.1
(3)
A 		2.6
(-2.9)
A 		2.3
(-3)
A 		5.5
(-1.7)
A 		15
C 7.6
(-1.7)
A 		2.7
(-2.7)
A 		1.1
(-3)
A 		31.9
(3)
A 		31
avr 16.6
(3) 		3
(-2.5) 		1.7
(-3) 		13.3
(1.7) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 3.3
(2.3)
A 		1.1
(-3)
A 		3
(1.6)
A 		1.5
(-2)
A 		3.6
(3)
A 		2.8
(1.1)
A 		3
B 1.4
(-3)
A 		4.1
(1)
A 		1.5
(-2.9)
A 		4.2
(1.1)
A 		5.5
(3)
A 		2.1
(-2)
A 		4
C 0.8
(-3)
A 		3.1
(-2.6)
A 		23.9
(0.6)
A 		39.7
(3)
A 		1.8
(-2.8)
A 		1.7
(-2.9)
A 		39
avr 1.8
(-3) 		2.8
(-2.5) 		9.5
(0.5) 		15.1
(3) 		3.6
(-2.2) 		2.2
(-2.8) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.2
(3)
A 		0.8
(-2.7)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		9
B 5.4
(3)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		1.2
(-2.1)
A 		5
C 2.5
(-0.5)
A 		0.8
(-2.5)
A 		0.4
(-3)
A 		5.4
(3)
A 		5
avr 5.7
(3) 		0.7
(-2.8) 		0.5
(-3) 		2.3
(-0.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.6
(-1.3)
A 		0.4
(-3)
A 		0.6
(-1.3)
A 		0.4
(-3)
A 		1.1
(3)
A 		0.7
(-0.4)
A 		1
B 0.5
(-2.7)
A 		1.4
(0.3)
A 		0.4
(-3)
A 		1.1
(-0.7)
A 		2.2
(3)
A 		0.8
(-1.7)
A 		2
C 0.3
(-3)
A 		0.9
(-2.5)
A 		6.1
(1.5)
A 		8
(3)
A 		0.6
(-2.8)
A 		0.6
(-2.8)
A 		8
avr 0.5
(-3) 		0.9
(-2.1) 		2.4
(1.2) 		3.2
(3) 		1.3
(-1.2) 		0.7
(-2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175926_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19575
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.G NCBI
Target Description Y73B3A.G /REP_DB=WormBase Gene ID /WP=CE26575 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026180(11), NM_075670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026180 NCBI Caenorhabditis elegans B0391.6 (B0391.6) mRNA, complete cds. 11/11 None
NM_075670 NCBI Caenorhabditis elegans Y73B3A.15 (Y73B3A.15) mRNA, complete cds. 11/11 A 
SNAP00000015400 ENSEMBL cdna:SNAP chromosome:CEL140:V:15605499:15607638:-1 11/11 None
GENEFINDER00000015413 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15602984:15609674:-1 11/11 None
SNAP00000022308 ENSEMBL cdna:SNAP chromosome:CEL140:X:114700:119143:1 11/11 None
GENEFINDER00000022344 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:114700:119143:1 11/11 None
B0391.6 ENSEMBL cdna:known chromosome:CEL140:V:15605499:15607638:-1 gene:B0391.6 11/11 A 
Y73B3A.15 ENSEMBL cdna:known chromosome:CEL140:X:114700:119143:1 gene:Y73B3A.15 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:114699-117470(+) 95.12 100.0
chrV:15604846-15607614(-) 92.83 98.15
Public Domain and Genome References
Gene Title F-box protein

Ensembl B0391.6
Y73B3A.15
Entrez Gene 181951 Entrez gene
190633 Entrez gene
SwissProt Q86D19 EMBL-EBI
Q95XF1 EMBL-EBI
WormBase CE33753 Wormbase
CE27326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89725 Hypothetical protein B0391.6 [Caenorhabditis elegans] ref|NP_001021351.1| B0391.6 [Caenorhabditis elegans] 0.0
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 0.0
blast AAK39365 Hypothetical protein Y73B3A.15 [Caenorhabditis elegans] ref|NP_508071.1| Y73B3A.15 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-41
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.8E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.6E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.1E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-31
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.8E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.4E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.1E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.6E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:175926_S_AT
gaaggttctgaaattgttgcctcatttgctgaatgtgaagaagttgaaacttgatagcaa
cttcttgagggataaggaaaacaattacgaacttgcgtcagtgctttctcatttcaaacc
cggaacgcttgaacatatgatcttggggttccatcgcgagtcggatattcccgggttcga
aaaagctgtccgtttgaaacaatggttacaggctaaaaacattaaaatgtattggaaggt
cgatgggcgaatccctcttgagcattttcttcattttacgagtgtcaatctggaaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTTCTGAAATTGTTGCCTCAT 167 335 822 Antisense
GGTTCTGAAATTGTTGCCTCATTTG 411 505 825 Antisense
GAAACTTGATAGCAACTTCTTGAGG 61 357 867 Antisense
GATAGCAACTTCTTGAGGGATAAGG 181 425 874 Antisense
TTACGAACTTGCGTCAGTGCTTTCT 675 681 906 Antisense
GGAACGCTTGAACATATGATCTTGG 69 531 943 Antisense
ATATGATCTTGGGGTTCCATCGCGA 513 21 956 Antisense
GGTTCCATCGCGAGTCGGATATTCC 112 507 968 Antisense
ATCGCGAGTCGGATATTCCCGGGTT 256 35 974 Antisense
AAATGTATTGGAAGGTCGATGGGCG 175 121 1046 Antisense
TTTACGAGTGTCAATCTGGAAATTT 307 673 1096 Antisense
Sequence Source Affymetrix Proprietary Database