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[175925_at] F-box protein /// F-box protein /// ---

Description Y73B3A.G /REP_DB=WormBase Gene ID /WP=CE26575 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 05      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 25.2
(0.6)
A 		10.5
(-1.9)
A 		3.9
(-3)
A 		39.5
(3)
A 		36
B 46.6
(3)
A 		4.5
(-3)
A 		39.2
(1.9)
A 		6.2
(-2.8)
A 		42
C 20.7
(-1.5)
A 		7.1
(-2.8)
A 		4.9
(-3)
A 		67.9
(3)
M 		63
avr 30.8
(1.6) 		7.4
(-3) 		16
(-1.3) 		37.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 49.1
(3)
A 		5.8
(-2.5)
A 		18.1
(-0.9)
A 		33.1
(1)
A 		49
(3)
A 		2
(-3)
A 		47
B 40.5
(3)
A 		21.5
(-0)
A 		30.9
(1.5)
A 		3.1
(-3)
A 		21.9
(0)
A 		12.5
(-1.5)
A 		37
C 23.6
(-0.6)
A 		47.5
(3)
A 		22.6
(-0.8)
A 		10
(-2.7)
A 		8
(-3)
A 		16.2
(-1.8)
A 		40
avr 37.7
(3) 		24.9
(0.2) 		23.9
(-0) 		15.4
(-1.9) 		26.3
(0.5) 		10.2
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.2
(3)
A 		2.3
(-2)
A 		1
(-3)
A 		5.8
(0.5)
A 		8
B 14.9
(3)
A 		1.1
(-3)
A 		9.1
(0.5)
A 		1.3
(-2.9)
A 		14
C 6.9
(0.2)
A 		2.1
(-2.8)
A 		1.7
(-3)
A 		11.5
(3)
M 		10
avr 10.3
(3) 		1.8
(-3) 		3.9
(-1.5) 		6.2
(0.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 9.1
(0.6)
A 		2.1
(-2.3)
A 		3.9
(-1.6)
A 		8.4
(0.3)
A 		14.8
(3)
A 		0.5
(-3)
A 		14
B 14.1
(3)
A 		7.1
(-0.2)
A 		7.5
(0)
A 		0.8
(-3)
A 		8.9
(0.7)
A 		4.7
(-1.2)
A 		13
C 8.7
(0.2)
A 		14.5
(3)
A 		5.8
(-1.2)
A 		2
(-3)
A 		2.6
(-2.7)
A 		5.4
(-1.4)
A 		13
avr 10.6
(3) 		7.9
(0.7) 		5.7
(-1.1) 		3.7
(-2.8) 		8.8
(1.5) 		3.5
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175925_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19575
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.G NCBI
Target Description Y73B3A.G /REP_DB=WormBase Gene ID /WP=CE26575 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075670, NM_074477, NM_001026180
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026180 NCBI Caenorhabditis elegans B0391.6 (B0391.6) mRNA, complete cds. None
SNAP00000015400 ENSEMBL cdna:SNAP chromosome:CEL140:V:15605499:15607638:-1 None
SNAP00000022308 ENSEMBL cdna:SNAP chromosome:CEL140:X:114700:119143:1 None
Y73B3A.15 ENSEMBL cdna:known chromosome:CEL140:X:114700:119143:1 gene:Y73B3A.15 A 
B0391.6 ENSEMBL cdna:known chromosome:CEL140:V:15605499:15607638:-1 gene:B0391.6 A 
GENEFINDER00000015413 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15602984:15609674:-1 None
GENEFINDER00000022344 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:114700:119143:1 None
NM_075670 NCBI Caenorhabditis elegans Y73B3A.15 (Y73B3A.15) mRNA, complete cds. A 
SNAP00000015399 ENSEMBL cdna:SNAP chromosome:CEL140:V:15602984:15604929:-1 None
Y73B3A.15 ENSEMBL cdna:known chromosome:CEL140:X:114700:119143:1 gene:Y73B3A.15 A 
SNAP00000022308 ENSEMBL cdna:SNAP chromosome:CEL140:X:114700:119143:1 None
GENEFINDER00000022344 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:114700:119143:1 None
NM_074477 NCBI Caenorhabditis elegans B0391.11 (B0391.11) mRNA, complete cds. A 
NM_075670 NCBI Caenorhabditis elegans Y73B3A.15 (Y73B3A.15) mRNA, complete cds. A 
B0391.11 ENSEMBL cdna:known chromosome:CEL140:V:15602984:15604929:-1 gene:B0391.11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000020197 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:114699-117470(+) 95.12 100.0
chrV:15604846-15607614(-) 92.83 98.15
Public Domain and Genome References
Gene Title F-box protein
F-box protein

Ensembl B0391.11
B0391.6
Y73B3A.15
Entrez Gene 181951 Entrez gene
181956 Entrez gene
190633 Entrez gene
SwissProt Q9NDU9 EMBL-EBI
Q86D19 EMBL-EBI
Q95XF1 EMBL-EBI
WormBase CE24768 Wormbase
CE33753 Wormbase
CE27326 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD89725 Hypothetical protein B0391.6 [Caenorhabditis elegans] ref|NP_001021351.1| B0391.6 [Caenorhabditis elegans] 0.0
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 0.0
blast AAK39365 Hypothetical protein Y73B3A.15 [Caenorhabditis elegans] ref|NP_508071.1| Y73B3A.15 [Caenorhabditis elegans] 0.0
blast CAB76407 Hypothetical protein B0391.11 [Caenorhabditis elegans] ref|NP_506878.1| B0391.11 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-41
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.8E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.6E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.1E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-31
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.8E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.4E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.1E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.6E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:175925_AT
atcgcgttgagtatggcacaatactcaagaaggttctgaaattgttgcctcatttgctga
atgtgaagaagttgaaacttgatagcaacttcttgagggataaggaaaacaattacgaac
ttgcgtcagtgctttctcatttcaaacccggaacgcttgaacatatgatcttggggttcc
atcgcgagtcggatattcccgggttcgaaaaagctgtccgtttgaaacaatggttacagg
ctaaaaacattaaaatgtattggaaggtcgatgggcgaatccctcttgagcattttcttc
attttacgagtgtcaatctggaaatttggaacggttccagaagaaatgttattgatattc
gaaacctgctcatatttcgcttaattgtgaaaaatgaaaataagaagtatgagcctaagc
ctaagtctaagtctaagtctaagtctaagcctaagcccaagtctaagcctaagcctcgtc
taggcctaaatgaccgaatcagtactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCGTTGAGTATGGCACAATACT 586 37 794 Antisense
TTGTTGCCTCATTTGCTGAATGTGA 347 707 835 Antisense
CCGTTTGAAACAATGGTTACAGGCT 390 61 1011 Antisense
ATTGATATTCGAAACCTGCTCATAT 695 3 1144 Antisense
AAACCTGCTCATATTTCGCTTAATT 651 125 1155 Antisense
CCTGCTCATATTTCGCTTAATTGTG 375 267 1158 Antisense
CCTAAGTCTAAGTCTAAGTCTAAGT 92 267 1213 Antisense
CTAAGCCTAAGCCTCGTCTAGGCCT 33 225 1256 Antisense
AGCCTAAGCCTCGTCTAGGCCTAAA 462 71 1259 Antisense
GCCTCGTCTAGGCCTAAATGACCGA 10 283 1266 Antisense
GGCCTAAATGACCGAATCAGTACTG 151 543 1276 Antisense
Sequence Source Affymetrix Proprietary Database