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[175924_s_at]

Description Y73B3A.P /REP_DB=WormBase Gene ID /WP=CE26584 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 59      4grp_high_8_8 > 09      6grp_total > 38      4grp_total > 29      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 170.3
(2.4)
P 		116.5
(-0.7)
P 		77.3
(-3)
A 		179.7
(3)
P 		102
B 141.7
(-0.3)
P 		188.6
(3)
A 		104.5
(-3)
P 		118.4
(-2)
P 		84
C 179.8
(3)
P 		143
(-1.1)
A 		126.1
(-3)
P 		156.9
(0.4)
M 		54
avr 163.9
(3) 		149.4
(1.6) 		102.6
(-3) 		151.7
(1.8) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 168.9
(3)
A 		124.1
(1)
P 		35.9
(-3)
A 		90.5
(-0.5)
P 		68
(-1.6)
A 		133.2
(1.4)
P 		133
B 109.2
(-0.1)
P 		114.5
(0.5)
M 		85.4
(-3)
P 		113.4
(0.4)
A 		135.4
(3)
A 		129.8
(2.3)
M 		50
C 109.4
(-1.5)
A 		163.3
(3)
A 		128
(0.1)
A 		106.8
(-1.7)
A 		109.1
(-1.5)
P 		91.3
(-3)
P 		72
avr 129.2
(2.4) 		134
(3) 		83.1
(-3) 		103.6
(-0.6) 		104.2
(-0.5) 		118.1
(1.1) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 62
(3)
P 		25.3
(-2.3)
P 		20.2
(-3)
A 		26.3
(-2.1)
P 		42
B 45.2
(2.6)
P 		46.6
(3)
A 		24.2
(-3)
P 		25.2
(-2.7)
P 		22
C 59.5
(3)
P 		41.1
(-0.3)
A 		43.9
(0.2)
P 		26.5
(-3)
M 		33
avr 55.6
(3) 		37.7
(-0.6) 		29.4
(-2.3) 		26
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 31.1
(0.9)
A 		44.1
(3)
P 		7.8
(-3)
A 		23
(-0.5)
P 		20.5
(-0.9)
A 		32.4
(1.1)
P 		36
B 38
(0)
P 		38.1
(0)
M 		20.7
(-3)
P 		30
(-1.4)
A 		55
(3)
A 		48.4
(1.8)
M 		34
C 40.6
(1)
A 		49.8
(3)
A 		32.6
(-0.6)
A 		21.5
(-3)
A 		35.3
(-0.1)
P 		30.6
(-1.1)
P 		28
avr 36.6
(1.1) 		44
(3) 		20.4
(-3) 		24.8
(-1.9) 		36.9
(1.2) 		37.1
(1.2) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175924_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19576
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.P NCBI
Target Description Y73B3A.P /REP_DB=WormBase Gene ID /WP=CE26584 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069607(11), NM_075662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069607 NCBI Caenorhabditis elegans T11G6.5 (T11G6.5) mRNA, complete cds. 11/11 A 
NM_075662 NCBI Caenorhabditis elegans Y73B3A.9 (Y73B3A.9) mRNA, complete cds. 11/11 A 
SNAP00000000762 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10836254:10842717:-1 11/11 None
GENEFINDER00000000775 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10836254:10842717:-1 11/11 None
T11G6.5 ENSEMBL cdna:known chromosome:CEL140:IV:10835810:10842727:-1 gene:T11G6.5 11/11 A 
Y73B3A.9 ENSEMBL cdna:known chromosome:CEL140:X:150365:154445:-1 gene:Y73B3A.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022345 7/11 Cross Hyb Matching Probes None
SNAP00000022322 5/11 Cross Hyb Matching Probes None
SNAP00000022323 2/11 Cross Hyb Matching Probes None
GENEFINDER00000022350 4/11 Cross Hyb Matching Probes None
SNAP00000022324 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:150831-154445(-) 100.0 100.0
chrIV:10836623-10841453(-) 96.1 96.1
Public Domain and Genome References
Gene Title

Ensembl T11G6.5
Y73B3A.9
Entrez Gene 177976 Entrez gene
190627 Entrez gene
SwissProt Q22411 EMBL-EBI
Q95XF9 EMBL-EBI
WormBase CE32932 Wormbase
CE27335 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97443 Hypothetical protein T11G6.5 [Caenorhabditis elegans] emb|CAA93420.2| Hypothetical protein T11G6.5 [Caenorhabditis elegans] ref|NP_502008.2| T11G6.5 [Caenorhabditis elegans] 0.0
blast AAK39363 Hypothetical protein Y73B3A.9 [Caenorhabditis elegans] ref|NP_508063.1| Y73B3A.9 [Caenorhabditis elegans] 1.0E-161
blast CAA97443 Hypothetical protein T11G6.5 [Caenorhabditis elegans] emb|CAA93420.2| Hypothetical protein T11G6.5 [Caenorhabditis elegans] ref|NP_502008.2| T11G6.5 [Caenorhabditis elegans] 9.0E-41
blast AAK39363 Hypothetical protein Y73B3A.9 [Caenorhabditis elegans] ref|NP_508063.1| Y73B3A.9 [Caenorhabditis elegans] 5.0E-40
Sequence
Target Sequence 
>C. ELEGANS:175924_S_AT
aacgcccttccaaacagccagaaggcttttaataagatcaaccgaacctttctcaacttc
cgaaaaacggaggaatgcaagaatactctggcggtaccatcaattttaaattgcacgaaa
gcaaccccaactatctacagcatcaatgatctcaatacattcccagagtttctggcatta
agatctcccgaatacttcggcaccacttccttgccagaattgaatacagattcagctcca
caaagttctcaaatcaagtttacggtgagcaaaccaaaatcaacggcaaatacaaatgtg
ctaatagaagacgatgatgataatgttgaaaaggttatcgatgaatctacaaaagcagga
ttcattccgtccaattcagcaattcaatccgaatttcaaccacaaagtcctccattccaa
tttggattcaatccacgtggacgtggaagaggaaacttcaataatcgcggaggtcataat
tataacatgggacacggtcggtatggaaataacttctttaatcaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCCCTTCCAAACAGCCAGAAGG 567 143 82 Antisense
AATTGCACGAAAGCAACCCCAACTA 174 173 190 Antisense
AACCCCAACTATCTACAGCATCAAT 64 147 204 Antisense
CAATGATCTCAATACATTCCCAGAG 357 183 225 Antisense
CACCACTTCCTTGCCAGAATTGAAT 141 203 282 Antisense
GATTCAGCTCCACAAAGTTCTCAAA 276 431 310 Antisense
CCTCCATTCCAATTTGGATTCAATC 135 267 490 Antisense
TTGGATTCAATCCACGTGGACGTGG 147 709 503 Antisense
GGAAACTTCAATAATCGCGGAGGTC 386 527 532 Antisense
TAATTATAACATGGGACACGGTCGG 298 635 558 Antisense
TGGAAATAACTTCTTTAATCAATCA 112 547 585 Antisense
Sequence Source Affymetrix Proprietary Database