[Home] | [Total List]

[175923_at]

Description Y73B3A.P /REP_DB=WormBase Gene ID /WP=CE26584 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 19      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.2
(-3)
A 		3.3
(-2.8)
A 		3.7
(-1.8)
A 		5.6
(3)
A 		2
B 2.9
(-1.3)
A 		4.4
(3)
A 		2.3
(-3)
A 		2.4
(-2.7)
A 		2
C 3.1
(-3)
A 		5.1
(3)
A 		3.2
(-2.7)
A 		3.7
(-1.2)
A 		2
avr 3.1
(-3) 		4.3
(3) 		3.1
(-3) 		3.9
(1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 24.5
(3)
A 		2.4
(-3)
A 		4.6
(-2.4)
A 		2.3
(-3)
A 		8.6
(-1.3)
A 		3
(-2.8)
A 		22
B 5.1
(3)
A 		2.9
(-1.1)
A 		2.7
(-1.5)
A 		3.1
(-0.8)
A 		3.5
(0)
A 		1.9
(-3)
A 		3
C 1.9
(-3)
A 		2.7
(-0.3)
A 		2.8
(-0)
A 		3.7
(3)
A 		2.9
(0.3)
A 		2
(-2.7)
A 		2
avr 10.5
(3) 		2.7
(-2.7) 		3.4
(-2.2) 		3
(-2.5) 		5
(-1) 		2.3
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.2
(3)
A 		0.7
(-3)
A 		1
(0.6)
A 		0.8
(-1.8)
A 		1
B 0.9
(1)
A 		1.1
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1
C 1
(-0.3)
A 		1.5
(3)
A 		1.1
(0.3)
A 		0.6
(-3)
A 		1
avr 1
(1.8) 		1.1
(3) 		0.9
(0.6) 		0.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.5
(3)
A 		0.8
(-2.7)
A 		1
(-2.4)
A 		0.6
(-3)
A 		2.6
(0.1)
A 		0.7
(-2.8)
A 		4
B 1.8
(3)
A 		0.9
(-1.9)
A 		0.7
(-3)
A 		0.8
(-2.5)
A 		1.4
(0.8)
A 		0.7
(-3)
A 		1
C 0.7
(-3)
A 		0.8
(0)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0.9
(3)
A 		0.7
(-3)
A 		0
avr 2.3
(3) 		0.8
(-2.6) 		0.8
(-2.6) 		0.7
(-3) 		1.6
(0.4) 		0.7
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19576
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.P NCBI
Target Description Y73B3A.P /REP_DB=WormBase Gene ID /WP=CE26584 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075662 NCBI Caenorhabditis elegans Y73B3A.9 (Y73B3A.9) mRNA, complete cds. 11/11 A 
Y73B3A.9 ENSEMBL cdna:known chromosome:CEL140:X:150365:154445:-1 gene:Y73B3A.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000762 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022345 6/11 Cross Hyb Matching Probes None
SNAP00000022322 1/11 Cross Hyb Matching Probes None
SNAP00000022323 2/11 Cross Hyb Matching Probes None
GENEFINDER00000022350 5/11 Cross Hyb Matching Probes None
SNAP00000022324 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:150831-154445(-) 100.0 100.0
chrIV:10836623-10841453(-) 96.1 96.1
Public Domain and Genome References
Gene Title
Ensembl Y73B3A.9
Entrez Gene 190627 Entrez gene
SwissProt Q95XF9 EMBL-EBI
WormBase CE27335 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39363 Hypothetical protein Y73B3A.9 [Caenorhabditis elegans] ref|NP_508063.1| Y73B3A.9 [Caenorhabditis elegans] 1.0E-161
blast CAA97443 Hypothetical protein T11G6.5 [Caenorhabditis elegans] emb|CAA93420.2| Hypothetical protein T11G6.5 [Caenorhabditis elegans] ref|NP_502008.2| T11G6.5 [Caenorhabditis elegans] 9.0E-41
Sequence
Target Sequence 
>C. ELEGANS:175923_AT
gaatgcaagaatactctggcggtaccatcaattttaaattgcacgaaagcaaccccaact
atctacagcatcaatgatctcaatacattcccagagtttctggcattaagatctcccgaa
tacttcggcaccacttccttgccagaattgaatacagattcagctccacaaagttctcaa
atcaagtttacggtgagcaaaccaaaatcaacggcaaatacaaatgtgctaatagaagac
gatgatgataatgttgaaaaggttatcgatgaatctacaaaagcaggattcattccgtcc
aattcagcaattcaatccgaatttcaaccacaaagtcctccattccaatttggattcaat
ccacgtggacgtggaagaggaaacttcaataatcgcggaggtcataattataacatggga
cacggtcggtatggaaataacttctttaatcaatcaatgccagcatggatgaccaccttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCAAGAATACTCTGGCGGTAC 335 331 154 Antisense
TACTCTGGCGGTACCATCAATTTTA 2 647 165 Antisense
AATACATTCCCAGAGTTTCTGGCAT 97 173 235 Antisense
GTTTCTGGCATTAAGATCTCCCGAA 624 449 249 Antisense
AGATCTCCCGAATACTTCGGCACCA 612 65 262 Antisense
AATCAAGTTTACGGTGAGCAAACCA 467 169 333 Antisense
ATCAACGGCAAATACAAATGTGCTA 387 27 360 Antisense
AAAGCAGGATTCATTCCGTCCAATT 540 119 433 Antisense
CCGTCCAATTCAGCAATTCAATCCG 62 265 448 Antisense
CGAATTTCAACCACAAAGTCCTCCA 16 249 471 Antisense
AATGCCAGCATGGATGACCACCTTG 187 167 609 Antisense
Sequence Source Affymetrix Proprietary Database