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[175922_at]

Description Y73B3A.A /REP_DB=WormBase Gene ID /WP=CE26570 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 66      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 25.1
(-3)
A 		42.3
(-1.6)
A 		43.3
(-1.5)
A 		99
(3)
A 		74
B 55.3
(1.3)
A 		30.5
(-3)
A 		50
(0.4)
A 		65
(3)
A 		35
C 2.6
(-3)
A 		43.8
(-0.8)
A 		35.8
(-1.2)
A 		116.2
(3)
P 		114
avr 27.7
(-3) 		38.9
(-2) 		43
(-1.6) 		93.4
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 16.2
(-1.9)
A 		9.3
(-2.8)
A 		52.9
(3)
A 		7.8
(-3)
A 		27.3
(-0.4)
A 		31.4
(0.1)
A 		45
B 21.7
(-0.5)
A 		10.4
(-3)
A 		19.4
(-1)
A 		35.8
(2.7)
A 		18.7
(-1.1)
A 		37
(3)
A 		27
C 17.4
(-0.9)
A 		46.4
(3)
A 		1.8
(-3)
A 		17.8
(-0.8)
A 		11.3
(-1.7)
A 		26.6
(0.3)
A 		45
avr 18.4
(-3) 		22
(-1.4) 		24.7
(-0.2) 		20.5
(-2.1) 		19.1
(-2.7) 		31.7
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9.1
(-3)
A 		9.2
(-2.9)
A 		11.3
(-0.6)
A 		14.5
(3)
A 		5
B 17.6
(3)
A 		7.5
(-3)
A 		11.6
(-0.6)
A 		13.8
(0.7)
A 		10
C 0.9
(-3)
A 		12.6
(0.8)
A 		12.5
(0.7)
A 		19.6
(3)
P 		19
avr 9.2
(-3) 		9.8
(-2.5) 		11.8
(-0.7) 		16
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3
(-2.4)
A 		3.3
(-2.2)
A 		11.5
(3)
A 		2
(-3)
A 		8.2
(0.9)
A 		7.7
(0.6)
A 		10
B 7.6
(-0.6)
A 		3.5
(-3)
A 		4.7
(-2.3)
A 		9.5
(0.5)
A 		7.6
(-0.6)
A 		13.8
(3)
A 		10
C 6.4
(-0.4)
A 		14.2
(3)
A 		0.5
(-3)
A 		3.6
(-1.6)
A 		3.6
(-1.6)
A 		8.9
(0.7)
A 		14
avr 5.7
(-2.2) 		7
(-0.6) 		5.6
(-2.3) 		5
(-3) 		6.5
(-1.2) 		10.1
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175922_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19579
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.A NCBI
Target Description Y73B3A.A /REP_DB=WormBase Gene ID /WP=CE26570 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075681, NM_065019
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022356 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:39220:41883:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065019 3/11 Cross Hyb Matching Probes A 
NM_075681 5/11 Cross Hyb Matching Probes A 
GENEFINDER00000002899 3/11 Cross Hyb Matching Probes None
SNAP00000022295 4/11 Cross Hyb Matching Probes None
Y67D2.6 3/11 Cross Hyb Matching Probes A 
Y73B3A.21 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:39219-41883(+) 100.0 100.0
chrIII:1545024-1550731(-) 53.49 55.46
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39368 Hypothetical protein Y73B3A.21 [Caenorhabditis elegans] ref|NP_508082.1| Y73B3A.21 [Caenorhabditis elegans] 1.0E-104
blast AAK27888 Hypothetical protein Y67D2.6 [Caenorhabditis elegans] ref|NP_497420.1| Y67D2.6 [Caenorhabditis elegans] sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent helicase DHX35 homolog 7.0E-38
blast CAE69187 Hypothetical protein CBG15221 [Caenorhabditis briggsae] 5.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR000642 EMBL-EBI Peptidase M41 4.7E-30
Sequence
Target Sequence 
>C. ELEGANS:175922_AT
acaaaatcggcgtctgtgccagattactgtcaatcggcggtgaatactgtaataaatatt
cacaaacacgagaatcctggcgatattctggtattcttgacaggacaagacgaggtggaa
gacgtttgtgagaagctccgcgagctgggagagcttccccttcaatatgtacaaaggatc
gtcgattatgttcaagaaagactatccgaaatgaaaaaaattgtatttttcgaaatttct
agatttttagttgaaattcgagttctccatgatctcagcttcacaatgacccccatcttg
cctcgattccgcacttttcccaattttgggtctcgccacgcgggttactgtagcaccgat
ttcagctgtgtcggttgtaaagttgaacggaatattggcatgttgggggtcaaattgaag
ctgggagcggtaatcttcaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAAATCGGCGTCTGTGCCAGATT 208 111 433 Antisense
GTGCCAGATTACTGTCAATCGGCGG 575 475 448 Antisense
GTCAATCGGCGGTGAATACTGTAAT 612 463 461 Antisense
TCACAAACACGAGAATCCTGGCGAT 380 627 492 Antisense
ATCCTGGCGATATTCTGGTATTCTT 521 39 506 Antisense
ATTCGAGTTCTCCATGATCTCAGCT 549 9 688 Antisense
CATGATCTCAGCTTCACAATGACCC 54 211 700 Antisense
TACTGTAGCACCGATTTCAGCTGTG 443 647 778 Antisense
GATTTCAGCTGTGTCGGTTGTAAAG 88 429 790 Antisense
ACGGAATATTGGCATGTTGGGGGTC 476 93 819 Antisense
AGCTGGGAGCGGTAATCTTCACCGA 657 81 851 Antisense
Sequence Source Affymetrix Proprietary Database