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[175921_at]

Description Y73B3A.M /REP_DB=WormBase Gene ID /WP=CE26581 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 20      4grp_total > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 18.5
(-1.7)
A 		21.5
(0.1)
A 		26.4
(3)
A 		16.3
(-3)
A 		10
B 30.9
(2.6)
A 		32.2
(3)
A 		13.9
(-3)
A 		16
(-2.3)
A 		18
C 14.6
(-1.9)
A 		14
(-2.1)
A 		28.5
(3)
A 		11.4
(-3)
A 		17
avr 21.3
(1.8) 		22.6
(2.8) 		22.9
(3) 		14.6
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 10.3
(-2.8)
A 		31
(0.3)
A 		48.9
(3)
A 		44.6
(2.4)
A 		25.3
(-0.5)
A 		8.7
(-3)
A 		40
B 28.7
(-3)
A 		47.4
(-0.1)
A 		68
(3)
A 		28.8
(-3)
A 		39.6
(-1.3)
A 		37.6
(-1.6)
A 		39
C 33.6
(-1.2)
A 		65
(3)
A 		20.3
(-3)
A 		27.9
(-2)
A 		35.5
(-1)
A 		26.6
(-2.2)
A 		45
avr 24.2
(-3) 		47.8
(3) 		45.7
(2.5) 		33.8
(-0.6) 		33.5
(-0.6) 		24.3
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.7
(2.7)
A 		4.7
(0.1)
A 		6.9
(3)
A 		2.4
(-3)
A 		5
B 9.8
(3)
A 		7.9
(1.3)
A 		3.2
(-3)
A 		3.4
(-2.8)
A 		7
C 4.8
(-0.8)
A 		4
(-1.4)
A 		9.9
(3)
A 		1.9
(-3)
A 		8
avr 7.1
(3) 		5.5
(0.9) 		6.7
(2.5) 		2.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.9
(-3)
A 		11
(2.8)
A 		10.7
(2.6)
A 		11.3
(3)
A 		7.6
(0.6)
A 		2.1
(-2.9)
A 		9
B 10
(-1.4)
A 		15.8
(2.5)
A 		16.5
(3)
A 		7.6
(-3)
A 		16.1
(2.7)
A 		14
(1.3)
A 		9
C 12.4
(-0)
A 		19.8
(3)
A 		5.2
(-3)
A 		5.6
(-2.8)
A 		11.5
(-0.4)
A 		8.9
(-1.5)
A 		15
avr 8.1
(-3) 		15.5
(3) 		10.8
(-0.8) 		8.2
(-2.9) 		11.7
(-0.1) 		8.3
(-2.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175921_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19590
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.M NCBI
Target Description Y73B3A.M /REP_DB=WormBase Gene ID /WP=CE26581 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075665
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022352 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:141327:149051:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:139220-142069(+) 96.01 96.01
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39354 Hypothetical protein Y73B3A.11 [Caenorhabditis elegans] ref|NP_508064.1| Y73B3A.11 [Caenorhabditis elegans] 7.0E-55
blast B88633 protein F56B3.9 [imported] - Caenorhabditis elegans 2.0E-44
blast NP_505144 W02D7.6 [Caenorhabditis elegans] gb|AAB63936.2| Hypothetical protein W02D7.6 [Caenorhabditis elegans] 4.0E-37
Sequence
Target Sequence 
>C. ELEGANS:175921_AT
catcttgctatgcatttttcctccgtacatgagcaaacttctgcactagaaagacaaatt
ttcaaaaatcaggaagattttacgacatggctcaatcaaaaagagcaagacacctgcact
ggatttagagttcgatcaagttacgataaaggaggccgccagatttgttatcgaatttgc
aggcacgaaggcacctacatgacaacagccaaaacatattgcccaccgatttcaaaaaag
ttgactggaacaaattgttgtcccgcctttttgaaaactgagaaaaacattatcaccggc
tctattgaagtttctggatatttcgagcattttggacatgagaaaagagcaagtttcaga
gctttaaatgatcaagagatcaaaattctcatcgggcttatgaaagatgggctcacaaac
tcgcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTTGCTATGCATTTTTCCTCCG 384 213 754 Antisense
GCATTTTTCCTCCGTACATGAGCAA 142 309 765 Antisense
GACACCTGCACTGGATTTAGAGTTC 525 367 862 Antisense
AAGGAGGCCGCCAGATTTGTTATCG 452 157 902 Antisense
TTTGCAGGCACGAAGGCACCTACAT 607 655 929 Antisense
GCACCTACATGACAACAGCCAAAAC 435 313 944 Antisense
AAAACATATTGCCCACCGATTTCAA 288 129 964 Antisense
TGGAACAAATTGTTGTCCCGCCTTT 664 545 999 Antisense
GAAAAACATTATCACCGGCTCTATT 283 355 1035 Antisense
CACCGGCTCTATTGAAGTTTCTGGA 680 199 1047 Antisense
AAAGATGGGCTCACAAACTCGCAGA 110 123 1156 Antisense
Sequence Source Affymetrix Proprietary Database