[Home] | [Total List]

[175920_at]

Description F12E12.A /REP_DB=WormBase Gene ID /WP=CE20670 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 68      4grp_total > 27      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 4.3
(-3)
A 		9.4
(-1.5)
A 		7.2
(-2.2)
A 		25.2
(3)
A 		21
B 11.7
(3)
A 		5.9
(-2.2)
A 		5
(-3)
A 		11.2
(2.6)
A 		7
C 5.8
(-2.7)
A 		22.8
(3)
A 		5.7
(-2.7)
A 		4.9
(-3)
A 		18
avr 7.3
(-2) 		12.7
(2.2) 		6
(-3) 		13.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 11.1
(0.3)
A 		4.4
(-3)
A 		7.9
(-1.3)
A 		5.8
(-2.3)
A 		4.7
(-2.9)
A 		16.7
(3)
A 		12
B 5.7
(-2.5)
A 		7.3
(-2.4)
A 		3.4
(-2.8)
A 		4.7
(-2.7)
A 		1.7
(-3)
A 		54.1
(3)
A 		52
C 4.9
(-3)
A 		10.6
(-2.1)
A 		7
(-2.7)
A 		7.5
(-2.6)
A 		25
(0.1)
A 		43.4
(3)
A 		39
avr 7.2
(-2.8) 		7.4
(-2.7) 		6.1
(-3) 		6
(-3) 		10.5
(-2.2) 		38.1
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.6
(-3)
A 		2
(-1.9)
A 		1.9
(-2.1)
A 		3.7
(3)
A 		2
B 3.7
(3)
A 		1.4
(-2.5)
A 		1.2
(-3)
A 		2.4
(-0.1)
A 		3
C 1.9
(-1.9)
A 		6.6
(3)
A 		2
(-1.8)
A 		0.8
(-3)
A 		6
avr 2.4
(-0.4) 		3.3
(3) 		1.7
(-3) 		2.3
(-0.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2
(-1.7)
A 		1.6
(-2.6)
A 		1.7
(-2.3)
A 		1.5
(-2.8)
A 		1.4
(-3)
A 		4.1
(3)
A 		3
B 2
(-2.6)
A 		2.4
(-2.5)
A 		0.8
(-3)
A 		1.3
(-2.8)
A 		0.7
(-3)
A 		20.2
(3)
A 		20
C 1.8
(-2.9)
A 		3.2
(-2.2)
A 		1.8
(-2.9)
A 		1.5
(-3)
A 		8.1
(0)
A 		14.5
(3)
A 		13
avr 1.9
(-2.7) 		2.4
(-2.5) 		1.4
(-3) 		1.4
(-3) 		3.4
(-2) 		12.9
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175920_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18901
Sequence Type Exemplar sequence
Representative Public ID F12E12.A NCBI
Target Description F12E12.A /REP_DB=WormBase Gene ID /WP=CE20670 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062239 NCBI Caenorhabditis elegans F12E12.7 (F12E12.7) mRNA, complete cds. 11/11 A 
SNAP00000025176 ENSEMBL cdna:SNAP chromosome:CEL140:II:3747778:3748398:-1 10/11 None
GENEFINDER00000025184 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3747496:3752272:-1 10/11 None
F12E12.7 ENSEMBL cdna:known chromosome:CEL140:II:3742517:3752272:-1 gene:F12E12.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3747535-3755328(-) 93.71 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-11
Ensembl F12E12.7
Entrez Gene 173719 Entrez gene
SwissProt Q9BLB8 EMBL-EBI
WormBase CE26808 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18930 Hypothetical protein F12E12.7 [Caenorhabditis elegans] ref|NP_494640.1| F12E12.7 [Caenorhabditis elegans] 0.0
blast CAB05801 Hypothetical protein F26D2.15 [Caenorhabditis elegans] emb|CAB04187.1| Hypothetical protein F26D2.15 [Caenorhabditis elegans] ref|NP_507157.1| F26D2.15 [Caenorhabditis elegans] 1.0E-105
blast NP_503752 DeHydrogenases, Short chain family member (dhs-14) [Caenorhabditis elegans] gb|AAF39953.1| Dehydrogenases, short chain protein 14 [Caenorhabditis elegans] 1.0E-103
blast AAK18930 Hypothetical protein F12E12.7 [Caenorhabditis elegans] ref|NP_494640.1| F12E12.7 [Caenorhabditis elegans] 3.0E-91
blast AAK18996 Hypothetical protein Y8A9A.5 [Caenorhabditis elegans] ref|NP_494653.1| Y8A9A.5 [Caenorhabditis elegans] 1.0E-13
blast CAB82210 Hypothetical protein F15A4.13 [Caenorhabditis elegans] ref|NP_496662.1| F15A4.13 [Caenorhabditis elegans] 3.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 5.0E-12
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 6.0E-17
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.7E-47
Sequence
Target Sequence 
>C. ELEGANS:175920_AT
atacacttcctttgcgatttggatttattagatgatcgatttttgagagaccatttaagt
ggattttcatatcataaagtaataattgacttccaaggaagatcagtttcaccagagcat
ctgaaatatctagcaccatttttacaaagtgagcagttagatttaaggagagctacattt
gatgcaccaactactcgttgtattttggctccgaattgggataaaatatatcttagaagc
tcaaacgatttaaacgagttactacttaataatggttctgatatccaagtccaacgaagc
atgctctcaaataccgatatcaacatatttctgaaaaactggagaaacggatcaaatcct
agacttgaatttgtacagatatggttttcaatcgaacgagatctcgatcgcagtgtaatt
ttgaaagaaattgagtgtcatcctgtatcaaatgatgaattggcccgtcgtcgagagttg
ccattccttgcacaaattgctattcgaaaacctgatggaacaatggctgcaatcaaattc
catagatcacaatttcaaatggttgtagcacatatggttgccaccctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACACTTCCTTTGCGATTTGGATT 74 25 1975 Antisense
GAGCATCTGAAATATCTAGCACCAT 313 389 2089 Antisense
GGAGAGCTACATTTGATGCACCAAC 366 519 2141 Antisense
AACTACTCGTTGTATTTTGGCTCCG 359 139 2163 Antisense
TCCAAGTCCAACGAAGCATGCTCTC 510 587 2258 Antisense
GCATGCTCTCAAATACCGATATCAA 42 311 2273 Antisense
GAGATCTCGATCGCAGTGTAATTTT 507 395 2372 Antisense
AAATGATGAATTGGCCCGTCGTCGA 544 119 2424 Antisense
TGGCCCGTCGTCGAGAGTTGCCATT 171 545 2435 Antisense
GTTGCCATTCCTTGCACAAATTGCT 142 441 2451 Antisense
TAGCACATATGGTTGCCACCCTTTT 339 651 2540 Antisense
Sequence Source Affymetrix Proprietary Database