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[175919_at]

Description F12E12.E /REP_DB=WormBase Gene ID /WP=CE20674 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 10      4grp_total > 42      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 6.2
(-3)
A 		98.1
(3)
A 		95.5
(2.8)
A 		70
(1.2)
A 		92
B 47.7
(-1.8)
A 		135.6
(3)
M 		75.6
(-0.3)
A 		25
(-3)
A 		111
C 19.1
(-3)
A 		154.5
(3)
A 		108.3
(1)
A 		48.2
(-1.7)
A 		135
avr 24.3
(-3) 		129.4
(3) 		93.1
(0.9) 		47.7
(-1.7) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 30
(-2.1)
A 		52.6
(-0.4)
A 		98.3
(3)
A 		17.3
(-3)
A 		76.7
(1.4)
A 		25.6
(-2.4)
A 		81
B 8.5
(-3)
A 		73.6
(2.5)
A 		65.7
(1.9)
A 		78.9
(3)
A 		34.8
(-0.8)
A 		24.2
(-1.7)
A 		70
C 11.9
(-2.8)
A 		89.7
(2)
A 		65.3
(0.5)
A 		9.5
(-2.9)
A 		106.4
(3)
M 		7.9
(-3)
A 		99
avr 16.8
(-3) 		72
(2.6) 		76.4
(3) 		35.2
(-1.1) 		72.6
(2.6) 		19.2
(-2.8) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 2.3
(-3)
A 		21.3
(2)
A 		25
(3)
A 		10.3
(-0.9)
A 		23
B 15.2
(-0.9)
A 		33.5
(3)
M 		17.5
(-0.4)
A 		5.3
(-3)
A 		28
C 6.3
(-3)
A 		44.4
(3)
A 		37.7
(1.9)
A 		8.1
(-2.7)
A 		38
avr 7.9
(-3) 		33.1
(3) 		26.7
(1.5) 		7.9
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 5.5
(-2.6)
A 		18.7
(1.6)
A 		21.4
(2.5)
A 		4.4
(-3)
A 		23.1
(3)
A 		6.2
(-2.4)
A 		19
B 3
(-3)
A 		24.5
(3)
A 		15.9
(0.6)
A 		20.9
(2)
A 		14.1
(0.1)
A 		9
(-1.3)
A 		22
C 4.4
(-2.5)
A 		27.4
(1.7)
A 		16.6
(-0.3)
A 		1.9
(-3)
A 		34.4
(3)
M 		2.6
(-2.9)
A 		33
avr 4.3
(-3) 		23.5
(2.9) 		18
(1.2) 		9.1
(-1.5) 		23.9
(3) 		5.9
(-2.5) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175919_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18902
Sequence Type Exemplar sequence
Representative Public ID F12E12.E NCBI
Target Description F12E12.E /REP_DB=WormBase Gene ID /WP=CE20674 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062233 NCBI Caenorhabditis elegans F12E12.5 (F12E12.5) mRNA, complete cds. 11/11 None
GENEFINDER00000025189 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3730146:3731542:-1 11/11 None
F12E12.5 ENSEMBL cdna:known chromosome:CEL140:II:3730146:3731542:-1 gene:F12E12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025167 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3730144-3731541(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-12
Ensembl F12E12.5
Entrez Gene 184388 Entrez gene
SwissProt Q9BLC4 EMBL-EBI
WormBase CE20674 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.1110.1.S1_S_AT similar to zinc finger protein, subfamily 1A, 4 cfa
HG-U133_PLUS_2:226761_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-U133B:226761_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-U133_PLUS_2:226759_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-U133B:226759_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-U133_PLUS_2:208472_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-U133A:208472_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-FOCUS:208472_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-U133A_2:208472_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HU35KSUBA:RC_AA456677_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HU35KSUBD:RC_N46997_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-U133_PLUS_2:229752_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-U133B:229752_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
U133_X3P:G11968010_3P_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
U133_X3P:HS.30172.0.S2_3P_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
U133_X3P:HS.30172.0.S1_3P_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
U133_X3P:HS.129036.0.A1_3P_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-U95B:44545_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-U95B:50884_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-U95D:69181_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
HG-U95E:88933_AT zinc finger protein, subfamily 1A, 4 (Eos) hs
MOUSE430A_2:1438274_AT zinc finger protein, subfamily 1A, 4 (Eos) mm
MOE430A:1438274_AT zinc finger protein, subfamily 1A, 4 (Eos) mm
MOUSE430_2:1438274_AT zinc finger protein, subfamily 1A, 4 (Eos) mm
MOUSE430_2:1460664_AT zinc finger protein, subfamily 1A, 4 (Eos) mm
MOE430A:1460664_AT zinc finger protein, subfamily 1A, 4 (Eos) mm
MOUSE430A_2:1460664_AT zinc finger protein, subfamily 1A, 4 (Eos) mm
MG-U74AV2:98277_AT zinc finger protein, subfamily 1A, 4 (Eos) mm
MG-U74BV2:115352_AT zinc finger protein, subfamily 1A, 4 (Eos) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18925 Hypothetical protein F12E12.5 [Caenorhabditis elegans] ref|NP_494634.1| F12E12.5 [Caenorhabditis elegans] 0.0
blast AAB96693 Hypothetical protein C46E10.9 [Caenorhabditis elegans] ref|NP_494633.2| C46E10.9 [Caenorhabditis elegans] 1.0E-37
blast AAU87800 Enhancer of hand mutation hnd-1 protein 3, isoform a [Caenorhabditis elegans] ref|NP_001023615.1| Enhancer of HAND mutation hnd-1 family member (ehn-3) [Caenorhabditis elegans] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 8.5E-7
Sequence
Target Sequence 
>C. ELEGANS:175919_AT
taaaccatcaccacttttcatacagcgaatcggctccgtgtggaaaatgccacaagttat
tcgggagtcctaggcatctcctggtacactaccattttgatcataaagaggctctgcgct
cttcggctcctgctcccacaagctccgccagactgtcacctatcaccgtatcaacttcag
gaagtcccagagctcagttggcaatctcgccacaagagaagccgcctcaaaaattgagca
taaatctaggaacttccccgatgatcgaagaattctgtgaacagaactcggcaactcttc
caaacactgatcaacagctctcaccaactctaagccccaatgagccaaggtttagaaatc
taattaccagtgagccaaccccaagctttgaatgcaagcactgcacgatcaagttccacg
atgccacaatgagcatcatgcataacgcccttcacgcgccaggaagcccattcaaatgtg
caatttgtggagcagaatgtggaaataagatcgtgttcaccatgcacatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACCATCACCACTTTTCATACAG 673 639 437 Antisense
TCATACAGCGAATCGGCTCCGTGTG 88 621 454 Antisense
ATTCGGGAGTCCTAGGCATCTCCTG 413 9 495 Antisense
CACCTATCACCGTATCAACTTCAGG 112 201 593 Antisense
TTCAGGAAGTCCCAGAGCTCAGTTG 439 683 612 Antisense
AGCTCAGTTGGCAATCTCGCCACAA 507 79 627 Antisense
TGAACAGAACTCGGCAACTCTTCCA 633 573 714 Antisense
ATCTAATTACCAGTGAGCCAACCCC 214 31 794 Antisense
TGCACGATCAAGTTCCACGATGCCA 710 577 838 Antisense
ATGAGCATCATGCATAACGCCCTTC 391 45 865 Antisense
AAGATCGTGTTCACCATGCACATCA 614 155 943 Antisense
Sequence Source Affymetrix Proprietary Database