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[175918_at]

Description F41B4.3 /REP_DB=WormBase Gene ID /WP=CE07213 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 03      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 20      6grp_total > 15      4grp_total > 05      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 786
1 2 3 4 range
A 799.2
(-1)
P 		713.6
(-1.7)
P 		542.9
(-3)
P 		1329.2
(3)
P 		786
B 870.8
(3)
P 		775.8
(-3)
P 		832.6
(0.6)
P 		793.3
(-1.9)
P 		95
C 907.8
(-0.2)
P 		602.4
(-3)
P 		681.1
(-2.3)
P 		1245.7
(3)
P 		643
avr 859.3
(-0.6) 		697.3
(-2.8) 		685.5
(-3) 		1122.7
(3) 		437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1557
1 2 3 4 5 6 range
A 1903.5
(3)
P 		1152.1
(0.1)
P 		984
(-0.6)
P 		626.7
(-2)
P 		386.2
(-2.9)
P 		365.3
(-3)
P 		1538
B 1575.4
(3)
P 		1286.2
(1.4)
P 		1055.7
(0.2)
P 		759.8
(-1.4)
P 		464.4
(-3)
P 		513.1
(-2.7)
P 		1111
C 1456.9
(3)
P 		1301.5
(2.2)
P 		671
(-1.2)
P 		564
(-1.8)
P 		617.8
(-1.5)
P 		346.4
(-3)
P 		1111
avr 1645.3
(3) 		1246.6
(1.1) 		903.6
(-0.6) 		650.2
(-1.8) 		489.5
(-2.6) 		408.3
(-3) 		1237
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 291
(3)
P 		154.9
(-2.5)
P 		141.9
(-3)
P 		194.6
(-0.9)
P 		149
B 277.7
(3)
P 		191.6
(-1.8)
P 		192.9
(-1.7)
P 		169.1
(-3)
P 		109
C 300.5
(3)
P 		173.2
(-3)
P 		237.4
(0)
P 		210
(-1.3)
P 		127
avr 289.7
(3) 		173.2
(-3) 		190.7
(-2.1) 		191.2
(-2.1) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 459
1 2 3 4 5 6 range
A 350.9
(1.9)
P 		409.7
(3)
P 		214.3
(-0.7)
P 		159
(-1.7)
P 		116.5
(-2.5)
P 		88.9
(-3)
P 		321
B 548.2
(3)
P 		428.1
(1)
P 		256.3
(-1.9)
P 		201.2
(-2.8)
P 		188.7
(-3)
P 		191.3
(-3)
P 		360
C 540
(3)
P 		397.1
(1)
P 		170.8
(-2.2)
P 		113.4
(-3)
P 		199.9
(-1.8)
P 		116
(-3)
P 		427
avr 479.7
(3) 		411.6
(1.8) 		213.8
(-1.6) 		157.9
(-2.6) 		168.4
(-2.4) 		132.1
(-3) 		348
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16879
Sequence Type Exemplar sequence
Representative Public ID F41B4.3 NCBI
Target Description F41B4.3 /REP_DB=WormBase Gene ID /WP=CE07213 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076749(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076749 NCBI Caenorhabditis elegans F41B4.3 (F41B4.3) mRNA, complete cds. 11/11 None
SNAP00000018341 ENSEMBL cdna:SNAP chromosome:CEL140:X:6835512:6836056:-1 11/11 None
GENEFINDER00000018343 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6835512:6836056:-1 11/11 None
F41B4.3 ENSEMBL cdna:known chromosome:CEL140:X:6835499:6836061:-1 gene:F41B4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6835511-6836056(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41B4.3
Entrez Gene 180954 Entrez gene
SwissProt Q966J4 EMBL-EBI
WormBase CE07213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85478 Hypothetical protein F41B4.3 [Caenorhabditis elegans] ref|NP_509150.1| F41B4.3 [Caenorhabditis elegans] 6.0E-59
blast CAE65797 Hypothetical protein CBG10904 [Caenorhabditis briggsae] 3.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509150.1 1 25-47
F41B4.3 1 25-47
SNAP00000018341 1 25-47
GENEFINDER00000018343 1 25-47
Sequence
Target Sequence 
>C. ELEGANS:175918_AT
tacctccgtcaagtcatcgatcatgctcaaaacaatcagcgtttgcgcggaaccatgtcc
ggaatcttttatcagacagcctacgccgctgccggtgctggagcaggaggcctcatggct
ggacccctaggtgcaatgttcggaacaatggctggagccgtttacggatatgcgaactct
gatgattactctagtgtttttggaattattcaaaacttggaagacgaggagaaggatatt
cttacatcaacgatcagaaaccacgtcggaggattgacatttgccgaattcgtaaactgg
ttcaaagatttgaaccaccaggccacattcatgcaacttctcatggcttatatggctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCTCCGTCAAGTCATCGATCATG 21 651 25 Antisense
CAATCAGCGTTTGCGCGGAACCATG 126 181 57 Antisense
GGAACCATGTCCGGAATCTTTTATC 685 529 73 Antisense
TTTTATCAGACAGCCTACGCCGCTG 162 675 91 Antisense
TGGAGCAGGAGGCCTCATGGCTGGA 233 549 123 Antisense
GACCCCTAGGTGCAATGTTCGGAAC 7 379 146 Antisense
GAGCCGTTTACGGATATGCGAACTC 203 385 179 Antisense
GGAGGATTGACATTTGCCGAATTCG 119 517 292 Antisense
AAGATTTGAACCACCAGGCCACATT 109 155 329 Antisense
GGCCACATTCATGCAACTTCTCATG 659 543 345 Antisense
ACTTCTCATGGCTTATATGGCTGCA 79 103 360 Antisense
Sequence Source Affymetrix Proprietary Database