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[175917_at]

Description F41B4.1 /REP_DB=WormBase Gene ID /WP=CE07211 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 28      6grp_highest_nonorm > 60      6grp_total > 17      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 234.8
(1)
P 		307.7
(3)
P 		246.1
(1.3)
P 		88.6
(-3)
A 		219
B 292.8
(3)
P 		241.7
(1.6)
P 		175.6
(-0.2)
P 		74.5
(-3)
A 		218
C 265.7
(2.1)
P 		292
(3)
P 		219.5
(0.4)
P 		123.4
(-3)
A 		169
avr 264.4
(2.5) 		280.5
(3) 		213.7
(0.8) 		95.5
(-3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 537
1 2 3 4 5 6 range
A 684.8
(3)
P 		338.2
(-1.6)
P 		305.8
(-2)
P 		231.9
(-3)
P 		291.7
(-2.2)
P 		400.4
(-0.8)
P 		453
B 461.2
(3)
P 		342.2
(-1.4)
P 		314.6
(-2.4)
P 		297.4
(-3)
P 		321
(-2.1)
P 		353.5
(-0.9)
P 		164
C 769.2
(3)
P 		319.3
(-2.2)
P 		370.8
(-1.6)
P 		247.3
(-3)
P 		306.6
(-2.3)
P 		330.1
(-2)
P 		522
avr 638.4
(3) 		333.2
(-1.8) 		330.4
(-1.9) 		258.9
(-3) 		306.4
(-2.2) 		361.3
(-1.4) 		380
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 85.5
(3)
P 		66.8
(1.5)
P 		64.3
(1.2)
P 		13
(-3)
A 		73
B 93.4
(3)
P 		59.7
(0.4)
P 		40.7
(-1.1)
P 		15.9
(-3)
A 		78
C 88
(3)
P 		84
(2.6)
P 		76.5
(2)
P 		20.8
(-3)
A 		67
avr 89
(3) 		70.2
(1.4) 		60.5
(0.6) 		16.6
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 126.2
(3)
P 		120.3
(2.5)
P 		66.6
(-2.3)
P 		58.8
(-3)
P 		88
(-0.4)
P 		97.5
(0.4)
P 		67
B 160.5
(3)
P 		113.9
(-0.3)
P 		76.4
(-3)
P 		78.8
(-2.8)
P 		130.4
(0.9)
P 		131.8
(1)
P 		84
C 285.1
(3)
P 		97.4
(-1.8)
P 		94.4
(-1.9)
P 		49.7
(-3)
P 		99.2
(-1.7)
P 		110.5
(-1.5)
P 		235
avr 190.6
(3) 		110.5
(-0.7) 		79.1
(-2.2) 		62.4
(-3) 		105.9
(-1) 		113.3
(-0.6) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175917_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16623
Sequence Type Exemplar sequence
Representative Public ID F41B4.1 NCBI
Target Description F41B4.1 /REP_DB=WormBase Gene ID /WP=CE07211 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076747(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076747 NCBI Caenorhabditis elegans F41B4.1 (F41B4.1) mRNA, complete cds. 11/11 None
SNAP00000018339 ENSEMBL cdna:SNAP chromosome:CEL140:X:6824102:6825769:-1 11/11 None
GENEFINDER00000018346 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6824102:6825769:-1 11/11 None
F41B4.1 ENSEMBL cdna:known chromosome:CEL140:X:6823847:6825790:-1 gene:F41B4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6824718-6825769(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41B4.1
Entrez Gene 180952 Entrez gene
SwissProt Q966J6 EMBL-EBI
WormBase CE30980 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85476 Hypothetical protein F41B4.1 [Caenorhabditis elegans] ref|NP_509148.2| F41B4.1 [Caenorhabditis elegans] 1.0E-143
blast CAE65796 Hypothetical protein CBG10901 [Caenorhabditis briggsae] 1.0E-103
Sequence
Target Sequence 
>C. ELEGANS:175917_AT
ccgagagacttaccagtatgcccgaatattgacggacacaattatacagcagaatttcct
ggactcgaatatttatccgacaacaaatttattgagaaccttatcaaagccggtcaggtt
tccatcggaaatacgggaatgatcagtcagccaggctcccgtgttgggtccgcgatgagc
gctccatactctcaaaaccaatccgcaaactcaactctgacccgtcaatcgcattctcaa
tctcacacccttcctcatcaaatgccgcagtatcagcaatatcatcgccacgcgacgcca
ccagcacccgcaccacaacatcaaaacaacaccaattattacaccgaaaatacgacctcc
actaccagctaccacccaacaagtgtaacatatggtagctcaaatgctaacagtcaatat
ggaggcagtcagagtcaatatggaagtatgagcaatgtcggaactggaagtacttatgga
acactgaaaggtggcatgaagcatacatcaactctcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGAGAGACTTACCAGTATGCCCGA 533 263 346 Antisense
TACAGCAGAATTTCCTGGACTCGAA 503 643 390 Antisense
TATCAAAGCCGGTCAGGTTTCCATC 54 653 447 Antisense
ACGGGAATGATCAGTCAGCCAGGCT 334 95 478 Antisense
TACTCTCAAAACCAATCCGCAAACT 609 645 532 Antisense
CTTCCTCATCAAATGCCGCAGTATC 539 219 595 Antisense
TATCAGCAATATCATCGCCACGCGA 17 657 616 Antisense
CGCACCACAACATCAAAACAACACC 181 255 654 Antisense
TACACCGAAAATACGACCTCCACTA 303 639 685 Antisense
CCAGCTACCACCCAACAAGTGTAAC 137 273 710 Antisense
CATGAAGCATACATCAACTCTCCCG 299 211 840 Antisense
Sequence Source Affymetrix Proprietary Database