[Home] | [Total List]

[175915_at]

Description F41B4.2 /REP_DB=WormBase Gene ID /WP=CE07212 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 43      6grp_total > 51      4grp_total > 52      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1450
1 2 3 4 range
A 1598.3
(2.4)
P 		1735.8
(3)
P 		1217.1
(0.8)
P 		320.3
(-3)
P 		1416
B 1570.2
(3)
P 		1545
(2.9)
P 		1335.1
(1.9)
P 		285.9
(-3)
P 		1284
C 1632.2
(3)
P 		1634.8
(3)
P 		1240.8
(1.2)
P 		294.3
(-3)
P 		1341
avr 1600.2
(2.8) 		1638.5
(3) 		1264.3
(1.3) 		300.2
(-3) 		1338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1146
1 2 3 4 5 6 range
A 793.2
(-1.7)
P 		974.4
(-0.5)
P 		1476.6
(3)
P 		1141.7
(0.7)
P 		853.4
(-1.3)
P 		613.2
(-3)
P 		863
B 864.3
(-2)
P 		1151.3
(-0.4)
P 		1758.8
(3)
P 		1170.3
(-0.3)
P 		770.8
(-2.5)
P 		682.3
(-3)
P 		1077
C 804.5
(-2.6)
P 		1133.7
(0.1)
P 		1199.3
(0.6)
P 		1491.2
(3)
P 		783.4
(-2.8)
P 		754.4
(-3)
P 		737
avr 820.7
(-2) 		1086.5
(0) 		1478.2
(3) 		1267.7
(1.4) 		802.5
(-2.1) 		683.3
(-3) 		795
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 535
1 2 3 4 range
A 581.9
(3)
P 		376.8
(0.7)
P 		318.2
(0)
P 		46.9
(-3)
P 		535
B 500.7
(3)
P 		381.6
(1.4)
P 		309.4
(0.4)
P 		60.9
(-3)
P 		440
C 540.3
(3)
P 		470
(2.1)
P 		432.4
(1.7)
P 		49.6
(-3)
P 		491
avr 541
(3) 		409.5
(1.4) 		353.3
(0.7) 		52.5
(-3) 		489

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 146.2
(-3)
P 		346.6
(3)
P 		321.6
(2.3)
P 		289.5
(1.3)
P 		257.5
(0.3)
P 		149.3
(-2.9)
P 		200
B 300.7
(-1.4)
P 		383.2
(1.5)
P 		427.1
(3)
P 		310
(-1.1)
P 		313.2
(-1)
P 		254.4
(-3)
P 		173
C 298.2
(-0.1)
P 		345.9
(3)
P 		305.2
(0.4)
P 		299.9
(0)
P 		253.5
(-2.9)
P 		252.5
(-3)
P 		93
avr 248.4
(-1.7) 		358.6
(3) 		351.3
(2.7) 		299.8
(0.5) 		274.7
(-0.6) 		218.7
(-3) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175915_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16753
Sequence Type Exemplar sequence
Representative Public ID F41B4.2 NCBI
Target Description F41B4.2 /REP_DB=WormBase Gene ID /WP=CE07212 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029475(11), NM_001029474(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029475 NCBI Caenorhabditis elegans F41B4.2b (F41B4.2) mRNA, complete cds. 11/11 None
NM_001029474 NCBI Caenorhabditis elegans F41B4.2a (F41B4.2) mRNA, complete cds. 11/11 None
SNAP00000018340 ENSEMBL cdna:SNAP chromosome:CEL140:X:6831324:6831846:-1 11/11 None
GENEFINDER00000018345 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6831324:6831846:-1 11/11 None
F41B4.2b.1 ENSEMBL cdna:known chromosome:CEL140:X:6831225:6831856:-1 gene:F41B4.2 11/11 None
F41B4.2b.3 ENSEMBL cdna:known chromosome:CEL140:X:6831238:6831855:-1 gene:F41B4.2 11/11 None
F41B4.2b.2 ENSEMBL cdna:known chromosome:CEL140:X:6831308:6835225:-1 gene:F41B4.2 11/11 None
F41B4.2a ENSEMBL cdna:known chromosome:CEL140:X:6831324:6835189:-1 gene:F41B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6831323-6831846(-) 100.0 100.0
Public Domain and Genome References
Ensembl F41B4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85477 Hypothetical protein F41B4.2a [Caenorhabditis elegans] ref|NP_001024645.1| F41B4.2a [Caenorhabditis elegans] 2.0E-89
blast AAK85477 Hypothetical protein F41B4.2a [Caenorhabditis elegans] ref|NP_001024645.1| F41B4.2a [Caenorhabditis elegans] 2.0E-87
blast AAP40533 Hypothetical protein F41B4.2b [Caenorhabditis elegans] ref|NP_001024646.1| F41B4.2b [Caenorhabditis elegans] 2.0E-87
Sequence
Target Sequence 
>C. ELEGANS:175915_AT
caaaactcgctggtgtcatgtctgtcatcgcactcgctaattctcttgctccagctgaaa
acgcggttcaggacgcgaaaaatcaagaggacaaacttcttcgttgctgggagaaggtgg
atgtgaacaatccgggttcgggatatgttcttagcgagccaattttcacgctctgtagcc
atatgattgacccaaaagataattccaagttccacgtcaatggagtagacgaaaattcag
acgactactctccagtgttgaaaatgttcgcagacaccattgacgactatgctgttttga
ccgtttgcctgcaagaggctttcgcgttccatggaccaactagaaatgctcaaatcagcc
taaggtgtctctgtaagagagaaggctgcaatgcacccaggtcactcactgagttcctcg
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAACTCGCTGGTGTCATGTCTGT 444 189 26 Antisense
CTAATTCTCTTGCTCCAGCTGAAAA 464 227 62 Antisense
AGGACAAACTTCTTCGTTGCTGGGA 458 55 113 Antisense
AGCGAGCCAATTTTCACGCTCTGTA 179 83 178 Antisense
GCTCTGTAGCCATATGATTGACCCA 521 297 195 Antisense
AGACGACTACTCTCCAGTGTTGAAA 501 71 264 Antisense
ATGTTCGCAGACACCATTGACGACT 363 47 289 Antisense
GACTATGCTGTTTTGACCGTTTGCC 315 373 310 Antisense
CTTTCGCGTTCCATGGACCAACTAG 491 223 344 Antisense
GAGAAGGCTGCAATGCACCCAGGTC 553 389 404 Antisense
CCAGGTCACTCACTGAGTTCCTCGA 210 273 422 Antisense
Sequence Source Affymetrix Proprietary Database