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[175912_at]

Description F12E12.D /REP_DB=WormBase Gene ID /WP=CE20673 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 18      4grp_total > 09      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 3.8
(-1.2)
A 		2.8
(-2.1)
A 		8.1
(3)
A 		1.9
(-3)
A 		6
B 2.5
(-3)
A 		5.9
(3)
A 		3.2
(-1.8)
A 		3
(-2.1)
A 		3
C 3.5
(-2.7)
A 		2.8
(-2.8)
A 		1.9
(-3)
A 		31.4
(3)
A 		30
avr 3.3
(-3) 		3.8
(-2.7) 		4.4
(-2.3) 		12.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 52.4
(3)
A 		5.1
(-2.7)
A 		3.7
(-2.9)
A 		2.6
(-3)
A 		22.2
(-0.6)
A 		2.9
(-3)
A 		50
B 4
(3)
A 		3.9
(2.7)
A 		2.1
(-3)
A 		3.6
(1.7)
A 		2.4
(-2.1)
A 		2.4
(-2.1)
A 		2
C 6
(-0.9)
A 		3.9
(-2.2)
A 		11.2
(2.4)
A 		3.7
(-2.4)
A 		2.7
(-3)
A 		12.2
(3)
A 		10
avr 20.8
(3) 		4.3
(-2.7) 		5.7
(-2.2) 		3.3
(-3) 		9.1
(-1) 		5.8
(-2.1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.4
(0.7)
A 		0.6
(-2)
A 		2.1
(3)
A 		0.3
(-3)
A 		2
B 0.8
(-1.5)
A 		1.4
(3)
A 		0.7
(-2.3)
A 		0.6
(-3)
A 		1
C 1.2
(-2.3)
A 		0.8
(-2.9)
A 		0.7
(-3)
A 		5.3
(3)
A 		5
avr 1.1
(-2) 		0.9
(-3) 		1.2
(-1.5) 		2.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.7
(3)
A 		1.8
(-2.3)
A 		0.8
(-2.9)
A 		0.7
(-3)
A 		6.7
(1)
A 		0.7
(-3)
A 		9
B 1.4
(3)
A 		1.3
(2.3)
A 		0.5
(-3)
A 		0.9
(-0.3)
A 		1
(0.3)
A 		0.9
(-0.3)
A 		1
C 2.2
(-0.4)
A 		1.2
(-2.1)
A 		2.9
(0.9)
A 		0.7
(-3)
A 		0.9
(-2.6)
A 		4.1
(3)
A 		3
avr 4.4
(3) 		1.4
(-2) 		1.4
(-2) 		0.8
(-3) 		2.9
(0.5) 		1.9
(-1.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18883
Sequence Type Exemplar sequence
Representative Public ID F12E12.D NCBI
Target Description F12E12.D /REP_DB=WormBase Gene ID /WP=CE20673 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062235(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062235 NCBI Caenorhabditis elegans F12E12.6 (F12E12.6) mRNA, complete cds. 11/11 None
SNAP00000025169 ENSEMBL cdna:SNAP chromosome:CEL140:II:3735957:3736927:-1 11/11 None
GENEFINDER00000025182 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3735957:3736927:-1 11/11 None
F12E12.6 ENSEMBL cdna:known chromosome:CEL140:II:3735957:3736926:-1 gene:F12E12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3735955-3736926(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F12E12.6
Entrez Gene 184389 Entrez gene
SwissProt Q9BLC2 EMBL-EBI
WormBase CE35466 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18924 Hypothetical protein F12E12.6 [Caenorhabditis elegans] ref|NP_494636.2| F12E12.6 [Caenorhabditis elegans] 1.0E-46
Sequence
Target Sequence 
>C. ELEGANS:175912_AT
aacagctcaagctcgatagtgatgagatgcgtcatgctgctcaggttctaaagaacgaaa
accaacagctccgagagcaaatgaaggagttcatccatagtaagacgatgagcataatcc
agacacaagcggagctccatcattccttgcttctgaagactcgagtcttgaacagaacac
agtccgacctggacaaatgcatgaagcacaaggaagagatgagatccgaaatgagaaggc
tgaatcgaaagctcaagagagctcaggaagccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGCTCAAGCTCGATAGTGATGA 656 135 128 Antisense
AGTGATGAGATGCGTCATGCTGCTC 631 59 145 Antisense
GCGTCATGCTGCTCAGGTTCTAAAG 12 291 156 Antisense
AACGAAAACCAACAGCTCCGAGAGC 676 141 181 Antisense
GACGATGAGCATAATCCAGACACAA 514 377 231 Antisense
AGACACAAGCGGAGCTCCATCATTC 676 69 248 Antisense
CATCATTCCTTGCTTCTGAAGACTC 447 213 265 Antisense
GACTCGAGTCTTGAACAGAACACAG 554 373 285 Antisense
GAACAGAACACAGTCCGACCTGGAC 56 353 297 Antisense
CGACCTGGACAAATGCATGAAGCAC 143 251 312 Antisense
GCTCAAGAGAGCTCAGGAAGCCAAG 453 299 378 Antisense
Sequence Source Affymetrix Proprietary Database