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[175911_at]

Description C30A5.6 /REP_DB=WormBase Gene ID /WP=CE24817 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 48      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 43.2
(-3)
A 		86.5
(0)
A 		129.1
(3)
A 		42.7
(-3)
A 		86
B 35.3
(-1.6)
A 		73.9
(0.5)
A 		121.8
(3)
A 		8.1
(-3)
A 		114
C 7.9
(-3)
A 		131.2
(3)
A 		96
(1.3)
P 		93.5
(1.2)
A 		123
avr 28.8
(-3) 		97.2
(1.7) 		115.6
(3) 		48.1
(-1.7) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 84.6
(-0.5)
A 		121
(3)
P 		84.7
(-0.5)
A 		79.7
(-1)
A 		58.9
(-3)
M 		75.8
(-1.4)
A 		62
B 34.5
(-3)
A 		150.1
(3)
M 		79.7
(-0.7)
A 		102.9
(0.6)
A 		71.1
(-1.1)
A 		54
(-2)
A 		116
C 34.3
(-2.2)
A 		133.2
(3)
P 		90
(0.7)
A 		20.1
(-3)
A 		53.4
(-1.2)
A 		23.4
(-2.8)
A 		113
avr 51.1
(-3) 		134.8
(3) 		84.8
(-0.6) 		67.6
(-1.8) 		61.1
(-2.3) 		51.1
(-3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 15.7
(-0.9)
A 		18.8
(-0.3)
A 		33.8
(3)
A 		6.2
(-3)
A 		28
B 11.2
(-0.8)
A 		18.2
(0.7)
A 		28.2
(3)
A 		1.7
(-3)
A 		27
C 2.6
(-3)
A 		37.7
(3)
A 		33.5
(2.3)
P 		15.8
(-0.7)
A 		35
avr 9.8
(-2.5) 		24.9
(1.3) 		31.8
(3) 		7.9
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 15.6
(-3)
A 		43.1
(3)
P 		18.5
(-2.4)
A 		20.2
(-2)
A 		17.8
(-2.5)
M 		18.5
(-2.4)
A 		28
B 12
(-3)
A 		50
(3)
M 		19.3
(-1.8)
A 		27.3
(-0.6)
A 		28.9
(-0.3)
A 		20.1
(-1.7)
A 		38
C 12.7
(-1.6)
A 		40.7
(3)
P 		22.9
(0.1)
A 		4
(-3)
A 		17.3
(-0.8)
A 		7.8
(-2.4)
A 		37
avr 13.4
(-3) 		44.6
(3) 		20.2
(-1.7) 		17.2
(-2.3) 		21.3
(-1.5) 		15.5
(-2.6) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7987
Sequence Type Exemplar sequence
Representative Public ID C30A5.6 NCBI
Target Description C30A5.6 /REP_DB=WormBase Gene ID /WP=CE24817 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066391(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066391 NCBI Caenorhabditis elegans C30A5.6 (C30A5.6) mRNA, complete cds. 11/11 None
SNAP00000019637 ENSEMBL cdna:SNAP chromosome:CEL140:III:8205253:8209762:-1 11/11 None
GENEFINDER00000019647 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8205253:8209762:-1 11/11 None
C30A5.6 ENSEMBL cdna:known chromosome:CEL140:III:8205253:8207279:-1 gene:C30A5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8205248-8207439(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30A5.6
Entrez Gene 176156 Entrez gene
SwissProt P34352 EMBL-EBI
WormBase CE29204 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02453 Hypothetical protein C30A5.6 [Caenorhabditis elegans] ref|NP_498792.1| C30A5.6 [Caenorhabditis elegans] sp|P34352|YK86_CAEEL Hypothetical protein C30A5.6 in chromosome III 0.0
blast CAE70190 Hypothetical protein CBG16664 [Caenorhabditis briggsae] 1.0E-166
blast AAL02453 Hypothetical protein C30A5.6 [Caenorhabditis elegans] ref|NP_498792.1| C30A5.6 [Caenorhabditis elegans] sp|P34352|YK86_CAEEL Hypothetical protein C30A5.6 in chromosome III 1.0E-160
blast AAL02451 Hypothetical protein C30A5.10a [Caenorhabditis elegans] ref|NP_498793.1| C30A5.10a [Caenorhabditis elegans] 1.0E-151
blast CAE70190 Hypothetical protein CBG16664 [Caenorhabditis briggsae] 1.0E-145
blast AAL02451 Hypothetical protein C30A5.10a [Caenorhabditis elegans] ref|NP_498793.1| C30A5.10a [Caenorhabditis elegans] 1.0E-126
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498792.1 4 159-181,210-229,242-264,269-286
C30A5.6 4 159-181,210-229,242-264,269-286
SNAP00000019637 5 667-689,696-718,728-750,793-815,825-847
GENEFINDER00000019647 3 659-681,709-731,741-763
Sequence
Target Sequence 
>C. ELEGANS:175911_AT
tattctctgtactttctgcattaacatgcctcatgttgatttcaacagaatggcttttac
ttgcttctgattcggccaccgagttcgtatcaacacttcatggaaccatgtggagatgtt
ctccaggcgattcatctgaagaaatgatccttctctcgtgttctctcattgctcttctat
ctcttctatctttcatttttgctctggcaacgctgaaacattcccagagtcttcagcatc
tcatgatctcgattcttgctattttatttgaaactgctctctatgtatctctcccattga
tcccctacaaaacccgtgatactgtcatggcaacaactattcttatatttgcttttgtgg
ctctactactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCTCTGTACTTTCTGCATTAAC 684 663 611 Antisense
GCTTTTACTTGCTTCTGATTCGGCC 94 305 663 Antisense
GCCACCGAGTTCGTATCAACACTTC 520 277 685 Antisense
GATGTTCTCCAGGCGATTCATCTGA 531 409 725 Antisense
AAGAAATGATCCTTCTCTCGTGTTC 73 153 749 Antisense
TCTATCTTTCATTTTTGCTCTGGCA 382 615 795 Antisense
ATTCCCAGAGTCTTCAGCATCTCAT 502 7 830 Antisense
AGCATCTCATGATCTCGATTCTTGC 239 79 845 Antisense
TGAAACTGCTCTCTATGTATCTCTC 355 573 879 Antisense
AAACCCGTGATACTGTCATGGCAAC 466 125 920 Antisense
ATTTGCTTTTGTGGCTCTACTACTG 422 17 957 Antisense
Sequence Source Affymetrix Proprietary Database