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[175909_at]

Description C06E1.1 /REP_DB=WormBase Gene ID /WP=CE00054 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 66      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 92      6grp_total > 76      4grp_total > 11      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 106.6
(-2.7)
P 		94.6
(-3)
P 		143.7
(-1.6)
P 		310.1
(3)
P 		216
B 157.8
(-0.8)
P 		167.6
(-0.3)
P 		106.1
(-3)
P 		245.1
(3)
P 		139
C 135.7
(-0.8)
P 		153.3
(-0.2)
P 		69
(-3)
P 		251.6
(3)
P 		183
avr 133.4
(-2) 		138.5
(-1.8) 		106.3
(-3) 		268.9
(3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 285.7
(1.3)
P 		135.7
(-3)
P 		244.7
(0.1)
P 		239.2
(-0)
P 		267.4
(0.8)
P 		344.8
(3)
P 		209
B 241.8
(-1.3)
P 		146.5
(-3)
P 		264.6
(-0.8)
P 		292.6
(-0.3)
P 		221.8
(-1.6)
P 		474.7
(3)
P 		328
C 175
(-2)
P 		125.7
(-3)
P 		196
(-1.6)
P 		339.3
(1.2)
P 		171.7
(-2.1)
P 		433
(3)
P 		307
avr 234.2
(-0.9) 		136
(-3) 		235.1
(-0.9) 		290.4
(0.3) 		220.3
(-1.2) 		417.5
(3) 		282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 38.8
(1.4)
P 		20.5
(-3)
P 		37.6
(1.1)
P 		45.4
(3)
P 		25
B 50.3
(2.6)
P 		41.4
(0.7)
P 		24.6
(-3)
P 		52.2
(3)
P 		28
C 44.9
(3)
P 		44.1
(2.8)
P 		24
(-3)
P 		42.4
(2.3)
P 		21
avr 44.7
(2.3) 		35.3
(-0.8) 		28.7
(-3) 		46.7
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 52.7
(-2.3)
P 		48.3
(-3)
P 		53.3
(-2.2)
P 		60.7
(-0.9)
P 		80.7
(2.5)
P 		83.9
(3)
P 		36
B 84.1
(-1.3)
P 		48.8
(-3)
P 		64.3
(-2.3)
P 		77.5
(-1.7)
P 		90.1
(-1.1)
P 		177
(3)
P 		128
C 64.9
(-1.5)
P 		38.3
(-3)
P 		49.9
(-2.3)
P 		68.2
(-1.3)
P 		55.6
(-2)
P 		145
(3)
P 		107
avr 67.2
(-1.5) 		45.1
(-3) 		55.8
(-2.3) 		68.8
(-1.4) 		75.5
(-1) 		135.3
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175909_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7228
Sequence Type Exemplar sequence
Representative Public ID C06E1.1 NCBI
Target Description C06E1.1 /REP_DB=WormBase Gene ID /WP=CE00054 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066492(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066492 NCBI Caenorhabditis elegans C06E1.1 (C06E1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000034828 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8605747:8606329:1 11/11 None
C06E1.1 ENSEMBL cdna:known chromosome:CEL140:III:8605735:8606407:1 gene:C06E1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034821 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8605741-8606324(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E1.1
Entrez Gene 176205 Entrez gene
SwissProt P34296 EMBL-EBI
WormBase CE00054 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27930 Hypothetical protein C06E1.1 [Caenorhabditis elegans] ref|NP_498893.1| C06E1.1 [Caenorhabditis elegans] sp|P34296|YKQ1_CAEEL Hypothetical protein C06E1.1 in chromosome III 4.0E-90
blast CAE69277 Hypothetical protein CBG15331 [Caenorhabditis briggsae] 3.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498893.1 2 52-74,94-116
C06E1.1 2 52-74,94-116
GENEFINDER00000034828 2 52-74,94-116
Sequence
Target Sequence 
>C. ELEGANS:175909_AT
gaatcgtctcaatggcattcctgatgctttccatctacgttcttctcggcaacttcctcc
cactcttctctcatatcatttgcatcttctggccagtcaaagagagcttcatgatcctcc
gccaacagaagaatccatcagacaacattctcctctattggattctctatgcaatggttt
cactttttgactattctgctcttcctggagtcccattctattacttcgctaaaaccgggc
tcttcctctcgatcaccacaaatggcttcgataaactcaaggaatggtctgagccagctc
tga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGTCTCAATGGCATTCCTGAT 302 329 137 Antisense
CATTCCTGATGCTTTCCATCTACGT 387 217 152 Antisense
CACTCTTCTCTCATATCATTTGCAT 28 199 197 Antisense
CATTTGCATCTTCTGGCCAGTCAAA 450 215 213 Antisense
CAAAGAGAGCTTCATGATCCTCCGC 317 193 234 Antisense
AATCCATCAGACAACATTCTCCTCT 615 167 268 Antisense
ACATTCTCCTCTATTGGATTCTCTA 493 105 281 Antisense
GGATTCTCTATGCAATGGTTTCACT 273 509 296 Antisense
TCACTTTTTGACTATTCTGCTCTTC 605 627 316 Antisense
TCTTCCTGGAGTCCCATTCTATTAC 592 617 336 Antisense
AAGGAATGGTCTGAGCCAGCTCTGA 508 161 415 Antisense
Sequence Source Affymetrix Proprietary Database