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[175908_at]

Description Y67D8A.A /REP_DB=WormBase Gene ID /WP=CE22786 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 70      6grp_total > 28      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 329.9
(2.2)
P 		142.6
(-2.3)
P 		112.7
(-3)
P 		361.7
(3)
P 		249
B 348.3
(3)
P 		143.9
(-2)
P 		101.2
(-3)
P 		252.1
(0.7)
P 		247
C 347.1
(3)
P 		182.5
(-1.2)
P 		114.7
(-3)
P 		293.7
(1.6)
P 		232
avr 341.8
(3) 		156.3
(-1.8) 		109.5
(-3) 		302.5
(2) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 423.4
(3)
P 		283.1
(0)
P 		154
(-2.7)
P 		140.7
(-3)
P 		236.6
(-1)
P 		215.7
(-1.4)
P 		283
B 419.7
(3)
P 		288.5
(0.5)
P 		110.7
(-3)
P 		161.5
(-2)
P 		227.3
(-0.7)
P 		219.7
(-0.9)
P 		309
C 454.8
(3)
P 		290.4
(0.3)
P 		100.4
(-2.8)
P 		85.2
(-3)
P 		228.9
(-0.7)
P 		196.5
(-1.2)
P 		370
avr 432.6
(3) 		287.3
(0.2) 		121.7
(-3) 		129.1
(-2.9) 		230.9
(-0.9) 		210.6
(-1.3) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 120.1
(3)
P 		31
(-2.9)
P 		29.5
(-3)
P 		52.9
(-1.5)
P 		91
B 111.1
(3)
P 		35.5
(-2.2)
P 		23.5
(-3)
P 		53.7
(-0.9)
P 		88
C 114.9
(3)
P 		52.5
(-2)
P 		40
(-3)
P 		49.5
(-2.2)
P 		75
avr 115.4
(3) 		39.7
(-2.4) 		31
(-3) 		52
(-1.5) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 78
(1)
P 		100.7
(3)
P 		33.5
(-3)
P 		35.7
(-2.8)
P 		71.4
(0.4)
P 		52.5
(-1.3)
P 		67
B 146
(3)
P 		96
(0.5)
P 		26.9
(-3)
P 		42.8
(-2.2)
P 		92.4
(0.3)
P 		81.9
(-0.2)
P 		119
C 168.6
(3)
P 		88.6
(-0.2)
P 		25.6
(-2.7)
P 		17.1
(-3)
P 		74.1
(-0.7)
P 		65.8
(-1.1)
P 		152
avr 130.9
(3) 		95.1
(0.9) 		28.7
(-3) 		31.9
(-2.8) 		79.3
(-0) 		66.7
(-0.8) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175908_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19154
Sequence Type Exemplar sequence
Representative Public ID Y67D8A.A NCBI
Target Description Y67D8A.A /REP_DB=WormBase Gene ID /WP=CE22786 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067904(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067904 NCBI Caenorhabditis elegans Y67D8A.3 (Y67D8A.3) mRNA, complete cds. 11/11 None
SNAP00000035503 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3252670:3254458:-1 11/11 None
GENEFINDER00000035504 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3253501:3254439:-1 11/11 None
Y67D8A.3 ENSEMBL cdna:known chromosome:CEL140:IV:3253501:3254458:-1 gene:Y67D8A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3253506-3254464(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67D8A.3
Entrez Gene 190512 Entrez gene
SwissProt Q95XU1 EMBL-EBI
WormBase CE22786 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
7548 sex differentiation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68545 Hypothetical protein Y67D8A.3 [Caenorhabditis elegans] ref|NP_500305.1| Y67D8A.3 [Caenorhabditis elegans] 1.0E-131
blast AAK68545 Hypothetical protein Y67D8A.3 [Caenorhabditis elegans] ref|NP_500305.1| Y67D8A.3 [Caenorhabditis elegans] 1.0E-127
blast CAE59897 Hypothetical protein CBG03381 [Caenorhabditis briggsae] 1.0E-95
blast CAE59897 Hypothetical protein CBG03381 [Caenorhabditis briggsae] 2.0E-92
blast AAB52258 Hypothetical protein K08B12.2a [Caenorhabditis elegans] ref|NP_741551.1| K08B12.2a [Caenorhabditis elegans] 7.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR001275 EMBL-EBI DM DNA-binding 1.0E-18
Pfam IPR001275 EMBL-EBI DM DNA-binding 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:175908_AT
ggattgctcgtgtggaacgtgcgcttctgtgatgagcatgcgagccaacgcgttgatccg
aaggttccgtcatcgtcagccagatcagtcgatggctgttgtgaaggctctccgatcaaa
gaatggaaatatgcgcctacgaatcgtgcctagaaatgacgaggagactgttgtagagaa
tgatggtactctagtgacctattccagtgataagaatggacatcaaacctacacaactac
aactcgcagaagttcaataatgacgaatagtaccgacgatcgggacagcgtagtatccac
cccaccatccacaaccaacaatagtactccatctggatcaccaccacttttggttccgta
cggagatgttgacattgctgtggatccggttggagctgctaattgggaacaaatcacgaa
tatcgtcagaacaacaatgctcaaccaaatcctcatgaaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTGCTCGTGTGGAACGTGCGCT 68 509 171 Antisense
GAACGTGCGCTTCTGTGATGAGCAT 144 349 185 Antisense
GATGAGCATGCGAGCCAACGCGTTG 185 411 201 Antisense
TGATCCGAAGGTTCCGTCATCGTCA 710 565 224 Antisense
TCGATGGCTGTTGTGAAGGCTCTCC 512 603 259 Antisense
TATGCGCCTACGAATCGTGCCTAGA 387 655 300 Antisense
TGGTACTCTAGTGACCTATTCCAGT 366 543 354 Antisense
GATCGGGACAGCGTAGTATCCACCC 50 417 448 Antisense
ATAGTACTCCATCTGGATCACCACC 39 23 491 Antisense
GACATTGCTGTGGATCCGGTTGGAG 103 371 541 Antisense
TGCTCAACCAAATCCTCATGAACCC 296 579 608 Antisense
Sequence Source Affymetrix Proprietary Database