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[175907_at]

Description Y67D8A.C /REP_DB=WormBase Gene ID /WP=CE26226 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 04      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 199.8
(3)
P 		121.9
(-1.2)
P 		88
(-3)
A 		182.3
(2.1)
A 		112
B 163.3
(1.2)
P 		186.7
(3)
P 		108.8
(-3)
A 		142.7
(-0.4)
M 		78
C 168.9
(3)
P 		157.1
(1.9)
P 		129.3
(-0.6)
P 		102
(-3)
A 		67
avr 177.3
(3) 		155.2
(1.1) 		108.7
(-3) 		142.3
(-0.1) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 126.8
(-0.3)
A 		207.9
(3)
P 		60.7
(-3)
A 		148.5
(0.6)
A 		83.3
(-2.1)
A 		94.1
(-1.6)
P 		147
B 151.2
(3)
P 		95.9
(-1.1)
P 		99
(-0.9)
P 		109.6
(-0.1)
A 		137.1
(2)
P 		70.2
(-3)
P 		81
C 223.8
(3)
P 		162.9
(0.1)
P 		195.6
(1.6)
P 		147.3
(-0.7)
A 		161.4
(-0)
P 		99.5
(-3)
P 		124
avr 167.3
(3) 		155.6
(2.1) 		118.4
(-0.7) 		135.1
(0.6) 		127.3
(-0) 		87.9
(-3) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 72.7
(3)
P 		26.5
(-2.6)
P 		23
(-3)
A 		26.7
(-2.6)
A 		50
B 52.1
(3)
P 		46.1
(1.7)
P 		25.2
(-3)
A 		30.4
(-1.8)
M 		27
C 55.9
(3)
P 		45.2
(1.3)
P 		45.1
(1.3)
P 		17.2
(-3)
A 		39
avr 60.2
(3) 		39.3
(-0.5) 		31.1
(-1.9) 		24.8
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 23.4
(-2)
A 		74
(3)
P 		13.2
(-3)
A 		37.7
(-0.6)
A 		25.1
(-1.8)
A 		22.9
(-2)
P 		61
B 52.6
(2.4)
P 		31.9
(-1.5)
P 		24
(-3)
P 		29
(-2.1)
A 		55.7
(3)
P 		26.2
(-2.6)
P 		32
C 83
(3)
P 		49.7
(-0.7)
P 		49.8
(-0.7)
P 		29.6
(-3)
A 		52.2
(-0.5)
P 		33.3
(-2.6)
P 		53
avr 53
(3) 		51.9
(2.7) 		29
(-2.6) 		32.1
(-1.9) 		44.3
(1) 		27.5
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175907_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19175
Sequence Type Exemplar sequence
Representative Public ID Y67D8A.C NCBI
Target Description Y67D8A.C /REP_DB=WormBase Gene ID /WP=CE26226 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067903, NM_067902, NM_171301
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000035499 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3218286:3227595:1 11/11 None
GENEFINDER00000035506 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3222440:3248145:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171301 4/11 Cross Hyb Matching Probes None
NM_001028384 4/11 Cross Hyb Matching Probes None
NM_067902 4/11 Cross Hyb Matching Probes None
NM_067903 7/11 Cross Hyb Matching Probes A B 
Y67D8A.2a.2 4/11 Cross Hyb Matching Probes None
Y67D8A.2c 4/11 Cross Hyb Matching Probes None
Y67D8A.2b 2/11 Cross Hyb Matching Probes None
Y67D8A.1.2 7/11 Cross Hyb Matching Probes A B 
Y67D8A.1.1 7/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3222406-3225923(+) 97.63 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE59898 Hypothetical protein CBG03382 [Caenorhabditis briggsae] 0.0
blast AAK68543 Hypothetical protein Y67D8A.1 [Caenorhabditis elegans] ref|NP_500304.2| Y67D8A.1 [Caenorhabditis elegans] 0.0
blast AAF52613 CG8475-PA, isoform A [Drosophila melanogaster] ref|NP_609189.2| CG8475-PA, isoform A [Drosophila melanogaster] sp|Q9VLS1|KPBB_DROME Probable phosphorylase b kinase beta regulatory chain (Phosphorylase kinase beta subunit) 0.0
blast CAE59898 Hypothetical protein CBG03382 [Caenorhabditis briggsae] 1.0E-169
blast AAV34781 Hypothetical protein Y67D8A.2c [Caenorhabditis elegans] ref|NP_001023555.1| Y67D8A.2c [Caenorhabditis elegans] 1.0E-139
blast AAV34780 Hypothetical protein Y67D8A.2a [Caenorhabditis elegans] ref|NP_741355.2| Y67D8A.2a [Caenorhabditis elegans] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR008734 EMBL-EBI Phosphorylase kinase alphabeta 1.0E-126
Pfam IPR008734 EMBL-EBI Phosphorylase kinase alphabeta 1.0E-126
Pfam IPR008734 EMBL-EBI Phosphorylase kinase alphabeta 1.2E-31
Pfam IPR008734 EMBL-EBI Phosphorylase kinase alphabeta 2.0E-46
Sequence
Target Sequence 
>C. ELEGANS:175907_AT
tctccacgctcgtttcgatttatcatctggaatgggtctcgaaacgccgaacgacgattt
acactatggacatcttcaaatggatcttgttgctctttatctactcacattggtacaaat
gatttcagccggatgcaaagttatctatactcatcatgaaattttgttagtaaaaattaa
aacgatttttcaatttttcaataaaaatggttttgagattttctccaacaaaaagagaaa
aaattcgttttccaacaaaaaaaaatatatttttaaaacaaattttaattttcgaaacga
aagaatggtaaaagccgccctggaagcaatcaatggtttcaacctatacggcagtacggg
aacatcagcatcagtaatctacgtggatattgatgggcacaatcgaaatcgtaccacttt
tgagacgattctcccacgggaaagtaactcgaaaaatacggacgccgcacttttgatgac
tgtcggatggccagcatttgctactcacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCACGCTCGTTTCGATTTATCA 15 609 495 Antisense
GAATGGGTCTCGAAACGCCGAACGA 431 331 524 Antisense
GCCGAACGACGATTTACACTATGGA 63 283 540 Antisense
GATCTTGTTGCTCTTTATCTACTCA 692 419 577 Antisense
AAAGCCGCCCTGGAAGCAATCAATG 358 125 805 Antisense
GGTTTCAACCTATACGGCAGTACGG 355 503 829 Antisense
GGCAGTACGGGAACATCAGCATCAG 654 535 844 Antisense
TTTTGAGACGATTCTCCCACGGGAA 583 677 912 Antisense
AAAATACGGACGCCGCACTTTTGAT 180 131 947 Antisense
GATGACTGTCGGATGGCCAGCATTT 519 411 969 Antisense
ATGGCCAGCATTTGCTACTCACGAT 45 53 981 Antisense
Sequence Source Affymetrix Proprietary Database