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[175906_s_at]

Description Y73B3A.Y /REP_DB=WormBase Gene ID /WP=CE26592 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 84      4grp_total > 39      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 101.7
(3)
A 		78.6
(-0.7)
A 		64.4
(-3)
A 		88.5
(0.9)
A 		37
B 131
(3)
A 		78.9
(-0.4)
A 		83.2
(-0.1)
A 		38
(-3)
A 		93
C 111.7
(1.9)
A 		43.8
(-3)
A 		90.1
(0.3)
A 		127.4
(3)
A 		84
avr 114.8
(3) 		67.1
(-3) 		79.2
(-1.5) 		84.6
(-0.8) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 106.4
(-1.3)
A 		113.8
(-0.8)
A 		84.6
(-3)
A 		129.5
(0.4)
A 		162.7
(3)
A 		116.4
(-0.6)
A 		78
B 97.1
(-0.3)
A 		73.8
(-3)
A 		100.6
(0.1)
A 		120.4
(2.5)
A 		104.2
(0.6)
A 		125
(3)
A 		51
C 87.6
(-3)
A 		156.1
(3)
A 		108.8
(-1.1)
A 		127.1
(0.5)
A 		107.9
(-1.2)
A 		125.8
(0.3)
A 		69
avr 97
(-3) 		114.6
(0.7) 		98
(-2.8) 		125.7
(3) 		124.9
(2.8) 		122.4
(2.3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 37
(3)
A 		17.1
(-2)
A 		16.8
(-2)
A 		12.9
(-3)
A 		24
B 41.8
(3)
A 		19.5
(-1)
A 		19.3
(-1)
A 		8.1
(-3)
A 		34
C 37
(3)
A 		12.6
(-3)
A 		31.4
(1.6)
A 		21.5
(-0.8)
A 		24
avr 38.6
(3) 		16.4
(-2.5) 		22.5
(-1) 		14.2
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 19.6
(-2.8)
A 		40.5
(1.3)
A 		18.4
(-3)
A 		32.8
(-0.2)
A 		49.1
(3)
A 		28.3
(-1.1)
A 		31
B 33.8
(-0.5)
A 		24.6
(-2.9)
A 		24.4
(-3)
A 		31.9
(-1)
A 		42.4
(1.9)
A 		46.6
(3)
A 		22
C 32.5
(-1.1)
A 		47.6
(3)
A 		27.7
(-2.4)
A 		25.6
(-3)
A 		34.9
(-0.5)
A 		42.1
(1.5)
A 		22
avr 28.6
(-1.4) 		37.6
(1.5) 		23.5
(-3) 		30.1
(-0.9) 		42.1
(3) 		39
(2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175906_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19587
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.Y NCBI
Target Description Y73B3A.Y /REP_DB=WormBase Gene ID /WP=CE26592 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075673(11), NM_067782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075673 NCBI Caenorhabditis elegans Y73B3A.3 (Y73B3A.3) mRNA, complete cds. 11/11 A 
NM_067782 NCBI Caenorhabditis elegans M70.4 (M70.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000012663 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2253135:2263659:-1 11/11 None
SNAP00000022304 ENSEMBL cdna:SNAP chromosome:CEL140:X:81949:91245:-1 10/11 None
GENEFINDER00000022355 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:84100:94978:-1 11/11 None
M70.4 ENSEMBL cdna:known chromosome:CEL140:IV:2253016:2263659:-1 gene:M70.4 11/11 None
Y73B3A.3 ENSEMBL cdna:known chromosome:CEL140:X:84043:91245:-1 gene:Y73B3A.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:87127-91407(-) 95.86 100.0
chrIV:2257102-2260005(-) 85.24 89.28
Public Domain and Genome References
Gene Title

Ensembl M70.4
Y73B3A.3
Entrez Gene 177015 Entrez gene
180380 Entrez gene
SwissProt Q688B0 EMBL-EBI
Q95XE8 EMBL-EBI
WormBase CE37266 Wormbase
CE27332 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39361 Hypothetical protein Y73B3A.3 [Caenorhabditis elegans] ref|NP_508074.1| Y73B3A.3 [Caenorhabditis elegans] 0.0
blast AAU05544 Hypothetical protein M70.4 [Caenorhabditis elegans] ref|NP_500183.2| M70.4 [Caenorhabditis elegans] 0.0
blast CAE68202 Hypothetical protein CBG13870 [Caenorhabditis briggsae] 0.0
blast AAK39361 Hypothetical protein Y73B3A.3 [Caenorhabditis elegans] ref|NP_508074.1| Y73B3A.3 [Caenorhabditis elegans] 1.0E-160
blast AAK39361 Hypothetical protein Y73B3A.3 [Caenorhabditis elegans] ref|NP_508074.1| Y73B3A.3 [Caenorhabditis elegans] 1.0E-157
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500183.2 1 5-27
M70.4 1 5-27
GENEFINDER00000012663 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:175906_S_AT
tgaggatgaatcccacggcttggaagaatggcttgacgcggtgccgactggctacattgt
agccgttgtgagcttcgacgaggcctctaatcagctgtcagatatggctcggcgcatctt
ttacgagatgggctccatgcacaaatgggcgggccgccgggacacatcatcatcgatgac
gtcatcagcttcaaatgacgtcagaaatttgccgaaacgacattcctgcccaaaatatga
ccgacatgaagagttttgtggtgccgccaaccttgactctccaataatgccacgtcacct
cagcgacgaacaacgctcgtcggacgcgattttcaacgtaccgatccttgtcgcgtcggg
tttggcaccggattctttgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGGATGAATCCCACGGCTTGGAA 593 567 375 Antisense
AAGAATGGCTTGACGCGGTGCCGAC 208 153 398 Antisense
TAGCCGTTGTGAGCTTCGACGAGGC 652 643 434 Antisense
TCGACGAGGCCTCTAATCAGCTGTC 202 601 449 Antisense
AGCTGTCAGATATGGCTCGGCGCAT 491 79 467 Antisense
TGAAGAGTTTTGTGGTGCCGCCAAC 171 575 621 Antisense
GCCAACCTTGACTCTCCAATAATGC 45 277 640 Antisense
GTCACCTCAGCGACGAACAACGCTC 662 463 668 Antisense
ACAACGCTCGTCGGACGCGATTTTC 78 111 684 Antisense
GATTTTCAACGTACCGATCCTTGTC 164 429 702 Antisense
GGTTTGGCACCGGATTCTTTGAGAA 478 505 733 Antisense
Sequence Source Affymetrix Proprietary Database