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[175904_s_at] F-box protein /// ---

Description Y73B3A.H /REP_DB=WormBase Gene ID /WP=CE26576 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_high_8_8 > 26      6grp_total > 07      4grp_total > 38      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 179
(3)
P 		73.9
(-1)
M 		21.5
(-3)
A 		71.1
(-1.1)
P 		158
B 198
(3)
P 		74.5
(-1)
P 		13.1
(-3)
A 		66.8
(-1.3)
P 		185
C 117.7
(3)
P 		32.5
(-2.7)
A 		28.1
(-3)
P 		76.7
(0.3)
P 		90
avr 164.9
(3) 		60.3
(-1.4) 		20.9
(-3) 		71.5
(-0.9) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 233.5
(3)
P 		96.3
(-0.8)
P 		98
(-0.8)
P 		107.8
(-0.5)
P 		37.9
(-2.5)
A 		19
(-3)
A 		215
B 210.4
(3)
P 		121
(0.3)
P 		93.4
(-0.5)
P 		31.5
(-2.4)
A 		30.1
(-2.4)
A 		10.2
(-3)
A 		200
C 191.5
(3)
P 		131.7
(0.9)
P 		79.7
(-0.9)
A 		56.5
(-1.7)
A 		49.5
(-1.9)
P 		18
(-3)
A 		174
avr 211.8
(3) 		116.3
(0.1) 		90.4
(-0.7) 		65.3
(-1.5) 		39.2
(-2.3) 		15.7
(-3) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 65.2
(3)
P 		16.1
(-1.9)
M 		5.6
(-3)
A 		10.4
(-2.5)
P 		60
B 63.2
(3)
P 		18.4
(-1.5)
P 		3
(-3)
A 		14.2
(-1.9)
P 		60
C 39
(3)
P 		9.4
(-3)
A 		9.8
(-2.9)
P 		12.9
(-2.3)
P 		30
avr 55.8
(3) 		14.6
(-2) 		6.1
(-3) 		12.5
(-2.2) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 43
(3)
P 		34.2
(1.6)
P 		21.3
(-0.4)
P 		27.3
(0.5)
P 		11.4
(-1.9)
A 		4.6
(-3)
A 		38
B 73.2
(3)
P 		40.3
(0.2)
P 		22.7
(-1.4)
P 		8.3
(-2.6)
A 		12.2
(-2.3)
A 		3.8
(-3)
A 		69
C 71
(3)
P 		40.2
(0.2)
P 		20.3
(-1.7)
A 		11.4
(-2.5)
A 		16
(-2.1)
P 		6
(-3)
A 		65
avr 62.4
(3) 		38.2
(0.5) 		21.4
(-1.3) 		15.7
(-1.9) 		13.2
(-2.1) 		4.8
(-3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175904_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19612
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.H NCBI
Target Description Y73B3A.H /REP_DB=WormBase Gene ID /WP=CE26576 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074477(11), NM_075670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074477 NCBI Caenorhabditis elegans B0391.11 (B0391.11) mRNA, complete cds. 11/11 A 
NM_075670 NCBI Caenorhabditis elegans Y73B3A.15 (Y73B3A.15) mRNA, complete cds. 11/11 A 
SNAP00000015399 ENSEMBL cdna:SNAP chromosome:CEL140:V:15602984:15604929:-1 11/11 None
GENEFINDER00000015413 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15602984:15609674:-1 11/11 None
SNAP00000022308 ENSEMBL cdna:SNAP chromosome:CEL140:X:114700:119143:1 11/11 None
GENEFINDER00000022344 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:114700:119143:1 11/11 None
B0391.11 ENSEMBL cdna:known chromosome:CEL140:V:15602984:15604929:-1 gene:B0391.11 11/11 A 
Y73B3A.15 ENSEMBL cdna:known chromosome:CEL140:X:114700:119143:1 gene:Y73B3A.15 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:117510-119143(+) 100.0 100.0
chrV:15602983-15604806(-) 98.1 98.1
Public Domain and Genome References
Gene Title F-box protein

Ensembl B0391.11
Y73B3A.15
Entrez Gene 181956 Entrez gene
190633 Entrez gene
SwissProt Q9NDU9 EMBL-EBI
Q95XF1 EMBL-EBI
WormBase CE24768 Wormbase
CE27326 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB76407 Hypothetical protein B0391.11 [Caenorhabditis elegans] ref|NP_506878.1| B0391.11 [Caenorhabditis elegans] 0.0
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 0.0
blast AAK39365 Hypothetical protein Y73B3A.15 [Caenorhabditis elegans] ref|NP_508071.1| Y73B3A.15 [Caenorhabditis elegans] 0.0
blast CAD89725 Hypothetical protein B0391.6 [Caenorhabditis elegans] ref|NP_001021351.1| B0391.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.8E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.6E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.1E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-31
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.8E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.4E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.1E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.6E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:175904_S_AT
gttttcgtgacaagatggtccttcaaaaagtttgccgaatcttgcgaaaagttgtcccgg
aaattgatgcggcagctcacagtgcagtgagttttcgaatgtgcagagattggacatttc
tcgaattttctaaacatgaaattgtatatcgagaattcgaaggcggttgcattgtgaagt
atgaggattatgcaaaacctgtcataggaggaaaccagttggaattggcattgaacgact
tctccaactttctaaaatgtccgaagcttcatcttaaacatttcggcgtaacattttcaa
gtgctgttggggaagaagcccgtcaggaggtgatcgagacggttggaactttgaaatggc
cgaatttaaaaactcatctcgacaatttccctaccaacttgcaaaaggcgattttccgaa
gcttaatcacggaccccattgaaatcgcaagggtcttcgacccaaatcatgaaggtgatg
cagtcaacattctggaatacaatacaactagttcacgattcgttatccagtgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTCGTGACAAGATGGTCCTTCA 606 447 152 Antisense
GAATCTTGCGAAAAGTTGTCCCGGA 114 329 188 Antisense
GAGAATTCGAAGGCGGTTGCATTGT 237 387 302 Antisense
GTGCTGTTGGGGAAGAAGCCCGTCA 492 431 452 Antisense
GGTGATCGAGACGGTTGGAACTTTG 331 501 480 Antisense
TTCCCTACCAACTTGCAAAAGGCGA 284 687 538 Antisense
GGCGATTTTCCGAAGCTTAATCACG 467 541 558 Antisense
TAATCACGGACCCCATTGAAATCGC 593 627 575 Antisense
TGAAATCGCAAGGGTCTTCGACCCA 248 573 591 Antisense
GAAGGTGATGCAGTCAACATTCTGG 351 335 622 Antisense
GTTCACGATTCGTTATCCAGTGCGA 412 443 662 Antisense
Sequence Source Affymetrix Proprietary Database