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[175903_s_at]

Description Y73B3A.B /REP_DB=WormBase Gene ID /WP=CE26571 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 89      4grp_total > 47      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 64.3
(3)
P 		9.5
(-3)
A 		26.4
(-1.1)
A 		32.2
(-0.5)
A 		55
B 95.5
(3)
P 		72
(1.1)
A 		20
(-3)
A 		36.6
(-1.7)
M 		76
C 69.3
(3)
P 		19.3
(-3)
A 		50.2
(0.7)
P 		41.6
(-0.3)
A 		50
avr 76.4
(3) 		33.6
(-2.8) 		32.2
(-3) 		36.8
(-2.4) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 10.6
(-3)
A 		35.6
(0.8)
A 		14.1
(-2.5)
A 		12.5
(-2.7)
A 		11
(-2.9)
A 		49.6
(3)
P 		39
B 21.1
(-0.7)
A 		22.1
(-0.5)
A 		28.8
(0.5)
P 		4.9
(-3)
A 		46.3
(3)
A 		34.4
(1.3)
A 		41
C 39.8
(1.9)
A 		13.6
(-1.7)
A 		47.9
(3)
A 		4.2
(-3)
A 		33.9
(1.1)
P 		28.8
(0.4)
M 		44
avr 23.8
(0.3) 		23.8
(0.3) 		30.3
(1.6) 		7.2
(-3) 		30.4
(1.6) 		37.6
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 23.4
(3)
P 		2.1
(-3)
A 		6.9
(-1.6)
A 		4.7
(-2.3)
A 		21
B 30.5
(3)
P 		17.8
(0.1)
A 		4.6
(-3)
A 		7.8
(-2.3)
M 		26
C 22.9
(3)
P 		5.5
(-3)
A 		17.5
(1.1)
P 		7
(-2.5)
A 		17
avr 25.6
(3) 		8.5
(-2.4) 		9.7
(-2) 		6.5
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2
(-3)
A 		12.6
(3)
A 		3.1
(-2.4)
A 		3.2
(-2.3)
A 		3.3
(-2.3)
A 		12.1
(2.7)
P 		11
B 7.3
(-0.9)
A 		7.4
(-0.9)
A 		7
(-1)
P 		1.3
(-3)
A 		18.8
(3)
A 		12.8
(0.9)
A 		18
C 14.8
(3)
A 		4.2
(-1.5)
A 		12.2
(1.9)
A 		0.8
(-3)
A 		11
(1.4)
P 		9.6
(0.8)
M 		14
avr 8
(0.8) 		8.1
(0.9) 		7.4
(0.5) 		1.8
(-3) 		11
(2.7) 		11.5
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175903_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19616
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.B NCBI
Target Description Y73B3A.B /REP_DB=WormBase Gene ID /WP=CE26571 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061816(11), NM_075679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061816 NCBI Caenorhabditis elegans F54A3.6 (F54A3.6) mRNA, complete cds. 11/11 A 
NM_075679 NCBI Caenorhabditis elegans Y73B3A.20 (Y73B3A.20) mRNA, complete cds. 11/11 B 
SNAP00000020155 ENSEMBL cdna:SNAP chromosome:CEL140:II:2224486:2255433:-1 11/11 None
GENEFINDER00000020157 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2225906:2232332:-1 11/11 None
F54A3.6 ENSEMBL cdna:known chromosome:CEL140:II:2225838:2232471:-1 gene:F54A3.6 11/11 A 
Y73B3A.20 ENSEMBL cdna:known chromosome:CEL140:X:47799:48496:1 gene:Y73B3A.20 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022298 5/11 Cross Hyb Matching Probes None
GENEFINDER00000022362 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:46469-48515(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F54A3.6
Y73B3A.20
Entrez Gene 173580 Entrez gene
3564958 Entrez gene
SwissProt Q9N4J9 EMBL-EBI
Q95XE3 EMBL-EBI
WormBase CE25902 Wormbase
CE33247 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF35959 Hypothetical protein F54A3.6 [Caenorhabditis elegans] ref|NP_494217.1| F54A3.6 [Caenorhabditis elegans] 1.0E-158
blast AAF35959 Hypothetical protein F54A3.6 [Caenorhabditis elegans] ref|NP_494217.1| F54A3.6 [Caenorhabditis elegans] 1.0E-111
blast AAF35960 Hypothetical protein F54A3.5 [Caenorhabditis elegans] ref|NP_494216.1| F54A3.5 [Caenorhabditis elegans] sp|Q9N4K0|U327_CAEEL Hypothetical UPF0327 protein F54A3.5 2.0E-49
blast CAE70466 Hypothetical protein CBG17053 [Caenorhabditis briggsae] 9.0E-46
blast AAK39367 Hypothetical protein Y73B3A.20 [Caenorhabditis elegans] ref|NP_508080.2| Y73B3A.20 [Caenorhabditis elegans] 3.0E-37
blast CAE70465 Hypothetical protein CBG17052 [Caenorhabditis briggsae] 3.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR007512 EMBL-EBI Protein of unknown function DUF543 2.7E-47
Sequence
Target Sequence 
>C. ELEGANS:175903_S_AT
ggacgagcgttggcgagaggaacggcgaagcgagtcttggcgggaaaatccccaatttcc
acggcgagaagaagcctgacgaccgattccaccacaatttcagcttggaagagatcgagc
tccaatgccggtcgacgacacatttttgtgagatatggcgcgaaacggcttaacaacgga
aatttagtggatcgagacggttatacactcaaaatccgcgatccagactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGAGCGTTGGCGAGAGGAACGG 112 523 214 Antisense
GTTGGCGAGAGGAACGGCGAAGCGA 636 435 222 Antisense
CGATTCCACCACAATTTCAGCTTGG 687 247 297 Antisense
CCACCACAATTTCAGCTTGGAAGAG 49 273 302 Antisense
CACAATTTCAGCTTGGAAGAGATCG 62 195 306 Antisense
GAAGAGATCGAGCTCCAATGCCGGT 353 339 321 Antisense
ACAACGGAAATTTAGTGGATCGAGA 254 111 386 Antisense
GTGGATCGAGACGGTTATACACTCA 666 487 400 Antisense
GGTTATACACTCAAAATCCGCGATC 588 505 412 Antisense
ATACACTCAAAATCCGCGATCCAGA 227 25 416 Antisense
CACTCAAAATCCGCGATCCAGACTG 184 197 419 Antisense
Sequence Source Affymetrix Proprietary Database