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[175902_at]

Description Y73B3A.B /REP_DB=WormBase Gene ID /WP=CE26571 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 68      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 32.2
(1.4)
A 		41.7
(3)
A 		5.2
(-3)
A 		10.6
(-2.1)
A 		37
B 6.5
(-3)
A 		6.7
(-2.9)
A 		7.1
(-2.8)
A 		29
(3)
A 		23
C 16
(-2)
A 		7.2
(-3)
A 		7.9
(-2.9)
A 		58.6
(3)
A 		51
avr 18.2
(-0.3) 		18.5
(-0.3) 		6.7
(-3) 		32.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 30.9
(0.7)
A 		5.7
(-2.9)
A 		4.9
(-3)
A 		5.9
(-2.9)
A 		29.6
(0.5)
A 		47
(3)
A 		42
B 9.1
(-2.3)
A 		8.7
(-2.5)
A 		17.4
(-0.1)
A 		6.8
(-3)
A 		6.7
(-3)
A 		28.8
(3)
A 		22
C 10.4
(-2)
A 		7.7
(-2.5)
A 		5.2
(-3)
A 		19.9
(-0.1)
A 		5.4
(-3)
A 		35.4
(3)
A 		30
avr 16.8
(-1.1) 		7.4
(-3) 		9.2
(-2.6) 		10.9
(-2.3) 		13.9
(-1.7) 		37.1
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.7
(3)
A 		9
(1.4)
A 		1.4
(-3)
A 		1.5
(-2.9)
A 		10
B 2.1
(-2.3)
A 		1.7
(-2.9)
A 		1.6
(-3)
A 		6.2
(3)
A 		5
C 5.3
(-0.5)
A 		2.1
(-3)
A 		2.8
(-2.5)
A 		9.9
(3)
A 		8
avr 6.4
(3) 		4.3
(0.2) 		1.9
(-3) 		5.9
(2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.7
(-0.3)
A 		2
(-2.5)
A 		1.1
(-3)
A 		1.5
(-2.8)
A 		8.9
(1.5)
A 		11.4
(3)
A 		10
B 3.2
(-2.1)
A 		2.9
(-2.3)
A 		4.2
(-1.4)
A 		1.8
(-3)
A 		2.7
(-2.4)
A 		10.8
(3)
A 		9
C 3.9
(-1.5)
A 		2.3
(-2.4)
A 		1.3
(-3)
A 		4
(-1.5)
A 		1.8
(-2.7)
A 		11.9
(3)
A 		11
avr 4.3
(-1.6) 		2.4
(-2.9) 		2.2
(-3) 		2.4
(-2.9) 		4.5
(-1.5) 		11.4
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19616
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.B NCBI
Target Description Y73B3A.B /REP_DB=WormBase Gene ID /WP=CE26571 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075679
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y73B3A.20 ENSEMBL cdna:known chromosome:CEL140:X:47799:48496:1 gene:Y73B3A.20 A 
SNAP00000022298 ENSEMBL cdna:SNAP chromosome:CEL140:X:44140:51545:1 None
GENEFINDER00000022362 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:47998:60750:1 None
NM_075679 NCBI Caenorhabditis elegans Y73B3A.20 (Y73B3A.20) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:46469-48515(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B3A.20
Entrez Gene 3564958 Entrez gene
SwissProt Q95XE3 EMBL-EBI
WormBase CE33247 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T18779 transposase containing protein - Caenorhabditis elegans 0.0
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast T32726 hypothetical protein C45H4.5 - Caenorhabditis elegans 0.0
blast AAK39367 Hypothetical protein Y73B3A.20 [Caenorhabditis elegans] ref|NP_508080.2| Y73B3A.20 [Caenorhabditis elegans] 3.0E-37
blast AAF35959 Hypothetical protein F54A3.6 [Caenorhabditis elegans] ref|NP_494217.1| F54A3.6 [Caenorhabditis elegans] 4.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Pfam IPR004038 EMBL-EBI Ribosomal protein L7Ae/L30e/S12e/Gadd45 5.3E-7
Pfam IPR000719 EMBL-EBI Protein kinase 7.2E-6
Sequence
Target Sequence 
>C. ELEGANS:175902_AT
gctgctgctggttcaccgaaattattcgctctctgctgtggagcaacgtagtttgatgga
ttgtaggccgccggttgaaagacagaaatctgaggaatctgctgcggctcggggatttgc
ggttcttggtagaattcctgattctccatttgatggtcaactggagattttacgacacgg
agaaaaaggacgagcgttggcgagaggaacggcgaagcgagtcttggcgggaaaatcccc
aatttccacggcgagaagaagcctgacgaccgattccaccacaatttcagcttggaagag
atcgagctccaatgccggtcgacgacacatttttgtgagatatggcgcgaaacggcttaa
caacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCTGCTGGTTCACCGAAATTAT 336 297 27 Antisense
TATTCGCTCTCTGCTGTGGAGCAAC 362 665 49 Antisense
GTTTGATGGATTGTAGGCCGCCGGT 535 435 77 Antisense
GTAGGCCGCCGGTTGAAAGACAGAA 672 453 89 Antisense
GAAATCTGAGGAATCTGCTGCGGCT 179 363 111 Antisense
GGGGATTTGCGGTTCTTGGTAGAAT 473 497 137 Antisense
GAATTCCTGATTCTCCATTTGATGG 666 323 158 Antisense
TCAACTGGAGATTTTACGACACGGA 585 629 183 Antisense
ACGGCGAGAAGAAGCCTGACGACCG 36 97 274 Antisense
GCCGGTCGACGACACATTTTTGTGA 556 281 340 Antisense
ATGGCGCGAAACGGCTTAACAACGG 325 49 368 Antisense
Sequence Source Affymetrix Proprietary Database