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[175901_at]

Description ZK105.A /REP_DB=WormBase Gene ID /WP=CE23447 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 80      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 2.3
(3)
A 		1.6
(-3)
A 		1.8
(-1.3)
A 		2.3
(3)
A 		1
B 2.7
(3)
A 		2.1
(1)
A 		2
(0.7)
A 		0.9
(-3)
A 		2
C 1.3
(-2.9)
A 		1.6
(-2.9)
A 		0.8
(-3)
A 		34.8
(3)
A 		34
avr 2.1
(-2.7) 		1.8
(-2.8) 		1.5
(-3) 		12.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.9
(-3)
A 		13
(3)
A 		1.8
(-2.6)
A 		1.9
(-2.5)
A 		0.9
(-3)
A 		7
(0)
A 		12
B 2.1
(-2.4)
A 		1
(-2.8)
A 		2
(-2.4)
A 		15.8
(3)
A 		1.1
(-2.8)
A 		0.6
(-3)
A 		15
C 1
(-2.7)
A 		8.4
(2.9)
A 		0.8
(-2.8)
A 		8.5
(3)
A 		0.6
(-3)
A 		1.1
(-2.6)
A 		8
avr 1.3
(-2.7) 		7.5
(2.1) 		1.5
(-2.5) 		8.7
(3) 		0.9
(-3) 		2.9
(-1.5) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.8
(3)
A 		0.3
(-3)
A 		0.5
(-0.6)
A 		0.3
(-3)
A 		1
B 0.9
(3)
A 		0.5
(-0.4)
A 		0.5
(-0.4)
A 		0.2
(-3)
A 		1
C 0.4
(-2.9)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		5.9
(3)
A 		6
avr 0.7
(-1.9) 		0.4
(-3) 		0.4
(-3) 		2.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.2
(-3)
A 		4.6
(3)
A 		0.4
(-2.7)
A 		0.5
(-2.6)
A 		0.3
(-2.9)
A 		1.7
(-1)
A 		4
B 0.7
(-2.3)
A 		0.3
(-2.9)
A 		0.5
(-2.6)
A 		4.2
(3)
A 		0.4
(-2.7)
A 		0.2
(-3)
A 		4
C 0.4
(-2.5)
A 		2.6
(3)
A 		0.2
(-3)
A 		1.7
(0.8)
A 		0.2
(-3)
A 		0.4
(-2.5)
A 		2
avr 0.4
(-2.7) 		2.5
(3) 		0.4
(-2.7) 		2.1
(1.9) 		0.3
(-3) 		0.8
(-1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175901_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19414
Sequence Type Exemplar sequence
Representative Public ID ZK105.A NCBI
Target Description ZK105.A /REP_DB=WormBase Gene ID /WP=CE23447 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072597(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072597 NCBI Caenorhabditis elegans ZK105.6 (ZK105.6) mRNA, complete cds. 10/11 None
ZK105.6 ENSEMBL cdna:known chromosome:CEL140:V:7723773:7726639:-1 gene:ZK105.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7723304-7726640(-) 85.38 93.86
Public Domain and Genome References
Gene Title
Ensembl ZK105.6
Entrez Gene 191225 Entrez gene
SwissProt Q965Z3 EMBL-EBI
WormBase CE32287 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68613 Hypothetical protein ZK105.6 [Caenorhabditis elegans] ref|NP_504998.2| ZK105.6 [Caenorhabditis elegans] 0.0
blast CAE70443 Hypothetical protein CBG17020 [Caenorhabditis briggsae] 8.0E-82
blast AAB65380 Hypothetical protein C07G3.8 [Caenorhabditis elegans] 1.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.6E-27
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 7.5E-10
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.1E-15
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 6.2E-7
Sequence
Target Sequence 
>C. ELEGANS:175901_AT
gcttgacaggaaaatgctacgcaggaaactccaatagagaaatggcggtgagggattacg
agagcctcgttttgaaaaattctgagttattcgcttgctttaactatatccagaagacaa
aaccgaatctttctaataacaaatgtctcgattttgattttttcgcaacaaattccaaag
caaaggtcgaaatatttacaacaaagaaggcatgcacgaaaacaataatggcaaacgttt
gtggtgcgaaagctgtgaaagattatgagaagtatagacaactggcagccaaaaaactga
aagatttgaataactctgtgacgtcacgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGACAGGAAAATGCTACGCAGG 127 307 1118 Antisense
ATGCTACGCAGGAAACTCCAATAGA 672 39 1131 Antisense
GAGAAATGGCGGTGAGGGATTACGA 238 389 1154 Antisense
GGGATTACGAGAGCCTCGTTTTGAA 84 495 1169 Antisense
AAATTCTGAGTTATTCGCTTGCTTT 20 117 1194 Antisense
TTCGCTTGCTTTAACTATATCCAGA 486 697 1207 Antisense
GAATCTTTCTAATAACAAATGTCTC 540 323 1242 Antisense
TTTTTTCGCAACAAATTCCAAAGCA 518 675 1275 Antisense
AAACGTTTGTGGTGCGAAAGCTGTG 315 123 1350 Antisense
GAAGTATAGACAACTGGCAGCCAAA 211 337 1386 Antisense
TGAATAACTCTGTGACGTCACGCCC 474 575 1424 Antisense
Sequence Source Affymetrix Proprietary Database