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[175900_s_at]

Description F07B7.I /REP_DB=WormBase Gene ID /WP=CE25846 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 53      4grp_total > 44      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.8
(-3)
A 		3.8
(3)
A 		3.3
(1.5)
A 		3.1
(0.9)
A 		2
B 6.5
(3)
A 		5.9
(2.3)
A 		2.2
(-2.4)
A 		1.7
(-3)
A 		5
C 2.6
(0.7)
A 		3.3
(3)
A 		1.5
(-3)
A 		2.2
(-0.7)
A 		2
avr 3.6
(0.9) 		4.3
(3) 		2.3
(-3) 		2.3
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.7
(2.5)
A 		1.5
(-3)
A 		2.8
(-0.8)
A 		1.7
(-2.7)
A 		5
(3)
A 		4.1
(1.5)
A 		4
B 2.4
(-2.7)
A 		3.9
(-1.7)
A 		11.1
(3)
A 		2
(-3)
A 		2.2
(-2.9)
A 		2.7
(-2.5)
A 		9
C 1.8
(-3)
A 		2.4
(-2.1)
A 		4.3
(0.7)
A 		2.6
(-1.8)
A 		5.9
(3)
A 		2.3
(-2.3)
A 		4
avr 3
(-1.7) 		2.6
(-2.3) 		6.1
(3) 		2.1
(-3) 		4.4
(0.5) 		3
(-1.7) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.7
(0.6)
A 		0.8
(1.8)
A 		0.9
(3)
A 		0.4
(-3)
A 		1
B 2.1
(3)
A 		1.5
(0.9)
A 		0.5
(-2.6)
A 		0.4
(-3)
A 		2
C 0.9
(3)
A 		0.9
(3)
A 		0.5
(-1.8)
A 		0.4
(-3)
A 		1
avr 1.2
(3) 		1.1
(2.3) 		0.6
(-1.5) 		0.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(-0.3)
A 		0.5
(-2.5)
A 		0.6
(-1.9)
A 		0.4
(-3)
A 		1.5
(3)
A 		1
(0.3)
A 		1
B 0.8
(-2.2)
A 		1.3
(-0.8)
A 		2.7
(3)
A 		0.5
(-3)
A 		0.9
(-1.9)
A 		1
(-1.6)
A 		2
C 0.7
(-2.1)
A 		0.7
(-2.1)
A 		1.1
(-0.4)
A 		0.5
(-3)
A 		1.9
(3)
A 		0.8
(-1.7)
A 		1
avr 0.8
(-1.2) 		0.8
(-1.2) 		1.5
(3) 		0.5
(-3) 		1.4
(2.4) 		0.9
(-0.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175900_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19411
Sequence Type Exemplar sequence
Representative Public ID F07B7.I NCBI
Target Description F07B7.I /REP_DB=WormBase Gene ID /WP=CE25846 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000026848 ENSEMBL cdna:SNAP chromosome:CEL140:III:13229603:13233838:-1 11/11 None
GENEFINDER00000026853 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13229603:13240406:-1 11/11 None
SNAP00000015087 ENSEMBL cdna:SNAP chromosome:CEL140:V:8840157:8844332:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072872 8/11 Cross Hyb Matching Probes A 
GENEFINDER00000015141 5/11 Cross Hyb Matching Probes None
SNAP00000018179 5/11 Cross Hyb Matching Probes None
GENEFINDER00000018194 5/11 Cross Hyb Matching Probes None
F07B7.6 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 0.0
blast T27790 hypothetical protein ZK228.2 - Caenorhabditis elegans 0.0
blast AAF98218 Hypothetical protein K06C4.14 [Caenorhabditis elegans] ref|NP_505289.1| K06C4.14 [Caenorhabditis elegans] 0.0
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.6E-19
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 8.0E-101
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 0.0034
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.6E-19
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 8.0E-101
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 0.0034
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 0.0034
Sequence
Target Sequence 
>C. ELEGANS:175900_S_AT
gccacgcagtaggtcaattgagtctcaatgacgtggtccatgcgggagcaaacatggtta
ttcctcttttcggcatcctcatccgctcacggttcattaaactgatgatcgtaggagatc
ttgaaaaagcctttcatcaggttcaagtacagcccgaatttaggaacttaactctatttc
tatggctaacggatttaaataagccgattacgagggataatatttgcaccaaacggtttg
tgcgcctaccatttggcatgagttgtagtcccaatttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACGCAGTAGGTCAATTGAGTCT 246 279 3689 Antisense
GAGTCTCAATGACGTGGTCCATGCG 656 399 3708 Antisense
ACGTGGTCCATGCGGGAGCAAACAT 231 93 3719 Antisense
AACATGGTTATTCCTCTTTTCGGCA 628 137 3739 Antisense
CCTCATCCGCTCACGGTTCATTAAA 208 267 3765 Antisense
AAAAGCCTTTCATCAGGTTCAAGTA 51 131 3813 Antisense
GGTTCAAGTACAGCCCGAATTTAGG 482 503 3828 Antisense
GGAACTTAACTCTATTTCTATGGCT 530 529 3851 Antisense
GCACCAAACGGTTTGTGCGCCTACC 292 315 3914 Antisense
GTGCGCCTACCATTTGGCATGAGTT 254 479 3928 Antisense
GGCATGAGTTGTAGTCCCAATTTAT 49 535 3943 Antisense
Sequence Source Affymetrix Proprietary Database