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[175899_at]

Description F07B7.F /REP_DB=WormBase Gene ID /WP=CE25844 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 64      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 18.7
(-2.5)
A 		13.9
(-3)
A 		40.9
(-0.4)
A 		77.4
(3)
A 		64
B 47.3
(3)
A 		11.2
(-3)
A 		14.2
(-2.5)
A 		16.5
(-2.1)
A 		36
C 12.8
(-3)
A 		29.2
(-2.2)
A 		26.5
(-2.3)
A 		134.6
(3)
P 		122
avr 26.3
(-2.2) 		18.1
(-3) 		27.2
(-2.1) 		76.2
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 12.1
(-2.5)
A 		18.1
(-1.7)
A 		35.7
(0.6)
A 		20.2
(-1.4)
A 		8
(-3)
A 		54.6
(3)
A 		47
B 23.7
(-0.3)
A 		30.9
(0.7)
A 		46.6
(3)
A 		34.7
(1.3)
A 		5.2
(-3)
A 		20.8
(-0.7)
A 		41
C 3.8
(-3)
A 		17.2
(-0.9)
A 		14
(-1.4)
A 		40.6
(2.8)
A 		41.6
(3)
A 		8.2
(-2.3)
A 		38
avr 13.2
(-3) 		22.1
(-0.2) 		32.1
(3) 		31.8
(2.9) 		18.3
(-1.4) 		27.9
(1.7) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 6.8
(-0.3)
A 		3
(-3)
A 		10.7
(2.6)
A 		11.3
(3)
A 		8
B 15.1
(3)
A 		2.8
(-3)
A 		3.3
(-2.8)
A 		3.5
(-2.7)
A 		12
C 4.2
(-3)
A 		8.4
(-1.6)
A 		9.2
(-1.4)
A 		22.7
(3)
P 		19
avr 8.7
(0.1) 		4.7
(-3) 		7.7
(-0.7) 		12.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.2
(-3)
A 		6.4
(-0.7)
A 		7.8
(0)
A 		5.1
(-1.4)
A 		2.4
(-2.9)
A 		13.3
(3)
A 		11
B 8.3
(1)
A 		10.3
(2.3)
A 		11.3
(3)
A 		9.2
(1.6)
A 		2.1
(-3)
A 		7.7
(0.7)
A 		9
C 1.4
(-3)
A 		5.2
(-1.1)
A 		3.6
(-1.9)
A 		8.2
(0.4)
A 		13.5
(3)
A 		2.8
(-2.3)
A 		12
avr 4
(-3) 		7.3
(2.1) 		7.6
(2.5) 		7.5
(2.4) 		6
(0.1) 		7.9
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175899_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19392
Sequence Type Exemplar sequence
Representative Public ID F07B7.F NCBI
Target Description F07B7.F /REP_DB=WormBase Gene ID /WP=CE25844 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072873, NM_072889
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K06C4.1 ENSEMBL cdna:known chromosome:CEL140:V:8889988:8891453:-1 gene:K06C4.1 A 
SNAP00000015090 ENSEMBL cdna:SNAP chromosome:CEL140:V:8847755:8849202:-1 None
F07B7.8 ENSEMBL cdna:known chromosome:CEL140:V:8847880:8849358:-1 gene:F07B7.8 A 
SNAP00000018181 ENSEMBL cdna:SNAP chromosome:CEL140:V:8889850:8891297:-1 None
NM_072873 NCBI Caenorhabditis elegans F07B7.8 (F07B7.8) mRNA, complete cds. A 
NM_072889 NCBI Caenorhabditis elegans K06C4.1 (K06C4.1) mRNA, complete cds. A 
NM_072889 NCBI Caenorhabditis elegans K06C4.1 (K06C4.1) mRNA, complete cds. A 
K06C4.1 ENSEMBL cdna:known chromosome:CEL140:V:8889988:8891453:-1 gene:K06C4.1 A 
SNAP00000015090 ENSEMBL cdna:SNAP chromosome:CEL140:V:8847755:8849202:-1 None
F07B7.8 ENSEMBL cdna:known chromosome:CEL140:V:8847880:8849358:-1 gene:F07B7.8 A 
SNAP00000018181 ENSEMBL cdna:SNAP chromosome:CEL140:V:8889850:8891297:-1 None
NM_072873 NCBI Caenorhabditis elegans F07B7.8 (F07B7.8) mRNA, complete cds. A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8889884-8890544(-) 79.28 100.0
chrV:8847789-8848449(-) 79.28 100.0
Public Domain and Genome References
Gene Title

Ensembl F07B7.8
K06C4.1
Entrez Gene 184116 Entrez gene
187063 Entrez gene
SwissProt Q965Z0 EMBL-EBI
Q9GYH4 EMBL-EBI
WormBase CE26803 Wormbase
CE11806 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84517 Hypothetical protein F07B7.8 [Caenorhabditis elegans] ref|NP_505274.1| F07B7.8 [Caenorhabditis elegans] 1.0E-138
blast AAF98224 Hypothetical protein K06C4.1 [Caenorhabditis elegans] ref|NP_505290.1| K06C4.1 [Caenorhabditis elegans] 1.0E-136
blast AAK84517 Hypothetical protein F07B7.8 [Caenorhabditis elegans] ref|NP_505274.1| F07B7.8 [Caenorhabditis elegans] 1.0E-133
blast AAF98224 Hypothetical protein K06C4.1 [Caenorhabditis elegans] ref|NP_505290.1| K06C4.1 [Caenorhabditis elegans] 1.0E-133
blast AAK84517 Hypothetical protein F07B7.8 [Caenorhabditis elegans] ref|NP_505274.1| F07B7.8 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.3E-12
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.7E-24
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.8E-9
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.7E-24
Sequence
Target Sequence 
>C. ELEGANS:175899_AT
gtgtacgatcagaaggaccaaaagccttaaaatgtttacaagcgagttttccgcaggtaa
aaaagctatattaacttctgtttcacatgaacttcagaaacttcatgacatttttgaaat
tgccaaatctgttaacttaccagagagagaaattgtggatggaataaacaagctttgtaa
aggtgttcatacttgtgagcatttaaaatgtgaggcaaaagaagaatatctcactattga
tttcaaaagttgtgaatctcaattaaccgtggcaaattcgacatgttttcaaaactttga
tccattcccagatgcagttgacgatccggcagaaatggaagaaattcaaaacgaagcatg
cgctaacttttttggtaaagaaaactgcatggagaaagagataacagaaacctcattatt
gttgaccgcccagtgtaagcgggttggggagccgcaactggggtcaagccggaataagag
tctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTACGATCAGAAGGACCAAAAGC 334 441 15 Antisense
AAGCCTTAAAATGTTTACAAGCGAG 259 1 36 Antisense
TTACAAGCGAGTTTTCCGCAGGTAA 541 681 50 Antisense
AACTTCTGTTTCACATGAACTTCAG 241 139 87 Antisense
AAAAGAAGAATATCTCACTATTGAT 126 133 231 Antisense
GAAACCTCATTATTGTTGACCGCCC 8 359 421 Antisense
TCATTATTGTTGACCGCCCAGTGTA 552 619 427 Antisense
GACCGCCCAGTGTAAGCGGGTTGGG 423 381 438 Antisense
AAGCGGGTTGGGGAGCCGCAACTGG 409 147 451 Antisense
CCGCAACTGGGGTCAAGCCGGAATA 246 261 466 Antisense
GGGTCAAGCCGGAATAAGAGTCTAA 631 495 475 Antisense
Sequence Source Affymetrix Proprietary Database