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[175898_at]

Description ZK105.F /REP_DB=WormBase Gene ID /WP=CE23451 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_high_8_8 > 36      6grp_total > 01      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 54.2
(-3)
P 		98
(3)
P 		54.6
(-2.9)
P 		72.9
(-0.4)
P 		44
B 86.5
(3)
P 		82
(1.9)
M 		66.5
(-1.9)
P 		62.2
(-3)
P 		24
C 77.8
(0.1)
P 		44.8
(-3)
A 		73
(-0.3)
P 		108.5
(3)
P 		64
avr 72.8
(-0.1) 		74.9
(0.7) 		64.7
(-3) 		81.2
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 37.3
(-2.4)
A 		80.5
(1.2)
P 		41.5
(-2.1)
P 		30.2
(-3)
A 		102.1
(3)
P 		32.1
(-2.8)
A 		72
B 79.3
(1.1)
P 		81.2
(1.2)
P 		18.3
(-2.4)
A 		7.5
(-3)
A 		112.7
(3)
P 		40
(-1.1)
P 		105
C 64
(-0.5)
P 		111.9
(3)
P 		37.4
(-2.4)
A 		28.9
(-3)
A 		82.7
(0.9)
P 		36.9
(-2.4)
A 		83
avr 60.2
(-0) 		91.2
(2.4) 		32.4
(-2.2) 		22.2
(-3) 		99.2
(3) 		36.3
(-1.9) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19.7
(2.1)
P 		21.3
(3)
P 		14.3
(-1)
P 		10.7
(-3)
P 		11
B 27.6
(3)
P 		20.3
(-0.1)
M 		15.4
(-2.1)
P 		13.3
(-3)
P 		14
C 25.7
(3)
P 		12.9
(-3)
A 		25.4
(2.9)
P 		18.3
(-0.5)
P 		13
avr 24.3
(3) 		18.2
(-0.6) 		18.4
(-0.5) 		14.1
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 6.9
(-3)
A 		28.6
(2.4)
P 		9
(-2.5)
P 		7.7
(-2.8)
A 		30.8
(3)
P 		7.8
(-2.8)
A 		24
B 27.6
(0.5)
P 		27
(0.4)
P 		4.5
(-2.7)
A 		2
(-3)
A 		45.8
(3)
P 		14.9
(-1.2)
P 		44
C 23.7
(0.8)
P 		34.1
(3)
P 		9.5
(-2.2)
A 		5.8
(-3)
A 		26.7
(1.4)
P 		12.4
(-1.6)
A 		28
avr 19.4
(-0.1) 		29.9
(2.1) 		7.7
(-2.5) 		5.2
(-3) 		34.4
(3) 		11.7
(-1.7) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175898_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19410
Sequence Type Exemplar sequence
Representative Public ID ZK105.F NCBI
Target Description ZK105.F /REP_DB=WormBase Gene ID /WP=CE23451 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072596(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072596 NCBI Caenorhabditis elegans ZK105.1 (ZK105.1) mRNA, complete cds. 11/11 None
SNAP00000002777 ENSEMBL cdna:SNAP chromosome:CEL140:V:7716592:7717252:1 11/11 None
GENEFINDER00000002790 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7716592:7717252:1 11/11 None
ZK105.1 ENSEMBL cdna:known chromosome:CEL140:V:7716592:7717252:1 gene:ZK105.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7715559-7717253(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK105.1
Entrez Gene 191220 Entrez gene
SwissProt Q965Z4 EMBL-EBI
WormBase CE27646 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68608 Hypothetical protein ZK105.1 [Caenorhabditis elegans] ref|NP_504997.1| ZK105.1 [Caenorhabditis elegans] 1.0E-108
blast T25496 hypothetical protein C03G6.5 - Caenorhabditis elegans 6.0E-42
blast AAK72054 Hypothetical protein C03G6.5 [Caenorhabditis elegans] ref|NP_504881.1| C03G6.5 [Caenorhabditis elegans] 8.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 5.6E-37
Sequence
Target Sequence 
>C. ELEGANS:175898_AT
taaatcttttcaatgttgccctcattgggtctgtgcttttaggggtagctcatggtgcaa
gcgtagcaactgctggatcaagatacttccgatgtactgttgaagatggatttcaagcag
ctaaatgtctttcgcgtctcatcaacattcaagaaaaagttcaagagcacgatatggcta
accaaagtaatatgaagaattttgtgagtgcttgtaattctcttcacacgtgtttctcca
atatccgatgcgacaaaaataaggaatatatgctcaaatcagttgaaaactattgtgaat
tcgttgcgtacgtccacgttgattttgctgagtgcaacgaaaaattaaatgacaacggtt
caaagtgtttcaaaaactgggaaccgatgtcgattggaattcctgacatgaacgacgaaa
tttgtgagaaaattttcaaacggaaagattgtatgaagaaggacattgtgaaaacatgcg
ggaaaaaagaatggagatcgttccgcgagaaagtcatcaatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAATCTTTTCAATGTTGCCCTCAT 558 641 143 Antisense
TGCCCTCATTGGGTCTGTGCTTTTA 255 585 159 Antisense
GGGTAGCTCATGGTGCAAGCGTAGC 125 497 185 Antisense
AAGCAGCTAAATGTCTTTCGCGTCT 79 151 257 Antisense
CTTTCGCGTCTCATCAACATTCAAG 553 223 271 Antisense
AGTGCTTGTAATTCTCTTCACACGT 50 61 349 Antisense
ACACGTGTTTCTCCAATATCCGATG 301 109 368 Antisense
TGTGAATTCGTTGCGTACGTCCACG 382 553 436 Antisense
GTACGTCCACGTTGATTTTGCTGAG 480 459 450 Antisense
AACCGATGTCGATTGGAATTCCTGA 420 145 524 Antisense
GTTCCGCGAGAAAGTCATCAATCCA 566 441 642 Antisense
Sequence Source Affymetrix Proprietary Database