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[175897_at]

Description ZK105.B /REP_DB=WormBase Gene ID /WP=CE23448 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 91      6grp_total > 70      4grp_total > 29      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 218.9
(3)
P 		160.8
(0.7)
P 		64.9
(-3)
P 		204.4
(2.4)
P 		154
B 242.6
(3)
P 		138.6
(-0.7)
P 		75.5
(-3)
P 		149.5
(-0.3)
P 		167
C 208.7
(2.6)
P 		184.6
(1.5)
P 		86.9
(-3)
P 		218.5
(3)
P 		132
avr 223.4
(3) 		161.3
(0.5) 		75.8
(-3) 		190.8
(1.7) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 136.3
(-2.7)
P 		118.6
(-3)
P 		363.8
(1.6)
P 		439.4
(3)
P 		175.6
(-1.9)
P 		130.1
(-2.8)
P 		321
B 121.3
(-3)
P 		134.1
(-2.7)
P 		248.3
(0.1)
P 		366.3
(3)
P 		237
(-0.2)
P 		205.4
(-0.9)
P 		245
C 154.4
(-3)
P 		158.7
(-2.9)
P 		245.9
(-1)
P 		424.2
(3)
P 		206.8
(-1.8)
P 		190.1
(-2.2)
P 		270
avr 137.3
(-3) 		137.1
(-3) 		286
(0.3) 		410
(3) 		206.5
(-1.5) 		175.2
(-2.2) 		273
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 79.7
(3)
P 		34.9
(-1.3)
P 		17
(-3)
P 		29.9
(-1.8)
P 		63
B 77.3
(3)
P 		34.2
(-1.3)
P 		17.5
(-3)
P 		31.9
(-1.6)
P 		60
C 69.1
(3)
P 		53.1
(0.5)
P 		30.3
(-3)
P 		36.8
(-2)
P 		39
avr 75.4
(3) 		40.7
(-0.9) 		21.6
(-3) 		32.9
(-1.7) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 25.1
(-3)
P 		42.2
(-1.8)
P 		79.2
(0.8)
P 		111.4
(3)
P 		53
(-1.1)
P 		31.7
(-2.5)
P 		86
B 42.2
(-3)
P 		44.6
(-2.7)
P 		60.3
(-1)
P 		97
(3)
P 		96.3
(2.9)
P 		76.6
(0.8)
P 		55
C 57.2
(-1.6)
P 		48.4
(-3)
P 		62.6
(-0.7)
P 		85.3
(3)
P 		66.9
(0)
P 		63.6
(-0.5)
P 		37
avr 41.5
(-3) 		45.1
(-2.6) 		67.4
(-0.2) 		97.9
(3) 		72.1
(0.3) 		57.3
(-1.3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175897_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19406
Sequence Type Exemplar sequence
Representative Public ID ZK105.B NCBI
Target Description ZK105.B /REP_DB=WormBase Gene ID /WP=CE23448 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072595(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072595 NCBI Caenorhabditis elegans ZK105.5 (ZK105.5) mRNA, complete cds. 10/11 None
SNAP00000002775 ENSEMBL cdna:SNAP chromosome:CEL140:V:7714831:7715733:-1 10/11 None
GENEFINDER00000002796 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7713350:7715733:-1 10/11 None
ZK105.5 ENSEMBL cdna:known chromosome:CEL140:V:7714831:7719911:-1 gene:ZK105.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7715028-7719912(-) 88.79 88.79
Public Domain and Genome References
Gene Title
Ensembl ZK105.5
Entrez Gene 191224 Entrez gene
SwissProt Q965Z5 EMBL-EBI
WormBase CE33349 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68612 Hypothetical protein ZK105.5 [Caenorhabditis elegans] ref|NP_504996.2| ZK105.5 [Caenorhabditis elegans] 0.0
blast AAK68612 Hypothetical protein ZK105.5 [Caenorhabditis elegans] ref|NP_504996.2| ZK105.5 [Caenorhabditis elegans] 1.0E-160
blast AAK68612 Hypothetical protein ZK105.5 [Caenorhabditis elegans] ref|NP_504996.2| ZK105.5 [Caenorhabditis elegans] 1.0E-118
blast AAA97994 Hypothetical protein K03B4.6 [Caenorhabditis elegans] ref|NP_504258.1| K03B4.6 [Caenorhabditis elegans] 3.0E-56
blast AAA97994 Hypothetical protein K03B4.6 [Caenorhabditis elegans] ref|NP_504258.1| K03B4.6 [Caenorhabditis elegans] 6.0E-56
blast AAB65380 Hypothetical protein C07G3.8 [Caenorhabditis elegans] 3.0E-47
blast CAB05489 Hypothetical protein F14H3.9 [Caenorhabditis elegans] ref|NP_507043.1| F14H3.9 [Caenorhabditis elegans] 6.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.1E-4
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 15.0
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 14.0
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 3.2E-14
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 7.3E-7
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 3.2E-14
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 7.3E-7
Sequence
Target Sequence 
>C. ELEGANS:175897_AT
aagacatgttttttcgacacaataaagtcgatttgtgacaaaccgattattgaaaacatt
tcgaaaaattatgacaagtatcttgaaactatcactaaaaaaccagaaaatgtctccgat
tgttttgatcctcattatcttttcgcacagtgtagatggagacaatctggaagagatgct
tatcttctgcttaagaattataaaaactctaccaagaagttcgaagcaaaagatgtggca
aacataagcaaagtgtgccaaggttttaagaattctacttacagttgttcacctcacgat
tcgagcacgcggatggtagaagatgagtgtgatgtcatcgacttaaaacagacaccgttt
attgcttgcttgtcaaagatacgtgcaaacaaagaagctctgccaaaatacaaatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACATGTTTTTTCGACACAATAA 569 151 1111 Antisense
ATGTCTCCGATTGTTTTGATCCTCA 564 47 1220 Antisense
TTGATCCTCATTATCTTTTCGCACA 60 707 1235 Antisense
AAGAGATGCTTATCTTCTGCTTAAG 158 155 1281 Antisense
GTGCCAAGGTTTTAAGAATTCTACT 533 477 1365 Antisense
TACTTACAGTTGTTCACCTCACGAT 489 645 1386 Antisense
TCACGATTCGAGCACGCGGATGGTA 143 611 1404 Antisense
GTCATCGACTTAAAACAGACACCGT 404 465 1444 Antisense
ACAGACACCGTTTATTGCTTGCTTG 236 109 1458 Antisense
TTGCTTGCTTGTCAAAGATACGTGC 320 701 1472 Antisense
GAAGCTCTGCCAAAATACAAATCAC 212 343 1504 Antisense
Sequence Source Affymetrix Proprietary Database