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[175896_at]

Description C14B9.5 /REP_DB=WormBase Gene ID /WP=CE24804 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 16      6grp_total > 16      4grp_total > 15      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 358
1 2 3 4 range
A 428.8
(3)
P 		70.7
(-3)
A 		190
(-1)
A 		268.3
(0.3)
A 		358
B 303.6
(2.4)
P 		160.6
(-3)
A 		189.2
(-1.9)
P 		319.9
(3)
M 		159
C 354.6
(3)
P 		125.3
(-3)
A 		189.2
(-1.3)
P 		282.3
(1.1)
A 		229
avr 362.3
(3) 		118.9
(-3) 		189.5
(-1.3) 		290.2
(1.2) 		243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 364.8
(1.7)
P 		428.8
(3)
P 		126.4
(-3)
A 		181.8
(-1.9)
A 		187.4
(-1.8)
P 		238.9
(-0.8)
P 		302
B 335.1
(3)
P 		264.3
(1)
P 		213.5
(-0.5)
P 		263.4
(1)
P 		124
(-3)
A 		201.5
(-0.8)
P 		211
C 452.3
(3)
P 		256.2
(-0.4)
P 		301.7
(0.4)
A 		110
(-3)
A 		200
(-1.4)
A 		159.1
(-2.1)
P 		342
avr 384.1
(3) 		316.4
(1.1) 		213.9
(-1.8) 		185.1
(-2.6) 		170.5
(-3) 		199.8
(-2.2) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 156.1
(3)
P 		15.3
(-3)
A 		49.7
(-1.5)
A 		39.3
(-2)
A 		141
B 96.8
(3)
P 		39.7
(-3)
A 		43.8
(-2.6)
P 		68.2
(-0)
M 		57
C 117.4
(3)
P 		36
(-3)
A 		66
(-0.8)
P 		47.6
(-2.1)
A 		81
avr 123.4
(3) 		30.3
(-3) 		53.2
(-1.5) 		51.7
(-1.6) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 67.3
(-1.1)
P 		152.5
(3)
P 		27.5
(-3)
A 		46.1
(-2.1)
A 		56.5
(-1.6)
P 		58.2
(-1.5)
P 		125
B 116.6
(3)
P 		88
(0.4)
P 		51.8
(-2.9)
P 		69.8
(-1.2)
P 		50.4
(-3)
A 		75.1
(-0.8)
P 		66
C 167.7
(3)
P 		78.2
(-0.7)
P 		76.8
(-0.7)
A 		22.1
(-3)
A 		64.7
(-1.2)
A 		53.3
(-1.7)
P 		146
avr 117.2
(3) 		106.2
(2.1) 		52
(-2.5) 		46
(-3) 		57.2
(-2.1) 		62.2
(-1.6) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175896_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7658
Sequence Type Exemplar sequence
Representative Public ID C14B9.5 NCBI
Target Description C14B9.5 /REP_DB=WormBase Gene ID /WP=CE24804 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171207(11), NM_066371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171207 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-8) (gei-8) mRNA, complete cds. 11/11 None
NM_066371 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-8) (gei-8) mRNA, complete cds. 11/11 None
SNAP00000018768 ENSEMBL cdna:SNAP chromosome:CEL140:III:8111538:8118411:-1 11/11 None
GENEFINDER00000018780 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8111538:8125396:-1 11/11 None
C14B9.6c ENSEMBL cdna:known chromosome:CEL140:III:8111100:8125396:-1 gene:C14B9.6 11/11 A 
C14B9.6b ENSEMBL cdna:known chromosome:CEL140:III:8111538:8125396:-1 gene:C14B9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176145 3 2 NM_066371 175896_at (11)
NM_066372 175876_at (11)
NM_171207 174852_at (11), 175896_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8111535-8115731(-) 100.0 100.0
Public Domain and Genome References
Ensembl C14B9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM22026 Gex interacting protein protein 8, isoform c [Caenorhabditis elegans] ref|NP_741245.1| GEX Interacting protein family member (gei-8) [Caenorhabditis elegans] 0.0
blast AAA27949 Gex interacting protein protein 8, isoform b [Caenorhabditis elegans] ref|NP_498772.1| GEX Interacting protein family member (gei-8) [Caenorhabditis elegans] sp|P34333|GEI8_CAEEL Gex-3 interacting protein 0.0
blast AAA27950 Gex interacting protein protein 8, isoform a [Caenorhabditis elegans] ref|NP_498773.2| GEX Interacting protein family member (gei-8) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 9.9E-10
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 0.021
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 9.9E-10
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 0.021
Sequence
Target Sequence 
>C. ELEGANS:175896_AT
aagccaggcctgatcattacgagaaattccatcttttgcgtcccaatgcggaaattgtcc
ggccgatcccaacaacgttttctcattttttgaacaaagcgacaacgtctacagtttcat
cgtccgcatcagctccacagtttctgcaaccgccagcagcagcttcaattgctgcaccaa
ctccaatttccacaccacatgcgatgccatctccctcagtaggtgtacagacagcacctc
cgactccacaagctgtacatcatcctgttatgcctattattcctggtaaaccatcatcag
tcaactcaaatgtgtcagatgtgtcttcagatgatgacgatgttcgaaatcctgagaagt
tgccagccaacagattgcctcctcttccaggcgataaaacagctttccgatcagttatcg
atttacgggcaaccggtcacgtggcagttaccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCAGGCCTGATCATTACGAGAA 14 149 1739 Antisense
CATCTTTTGCGTCCCAATGCGGAAA 356 213 1768 Antisense
ATGCGGAAATTGTCCGGCCGATCCC 710 39 1784 Antisense
GATCCCAACAACGTTTTCTCATTTT 185 417 1803 Antisense
GCCATCTCCCTCAGTAGGTGTACAG 91 281 1944 Antisense
TCCACAAGCTGTACATCATCCTGTT 37 589 1983 Antisense
CATCCTGTTATGCCTATTATTCCTG 273 211 1999 Antisense
TGGTAAACCATCATCAGTCAACTCA 11 553 2022 Antisense
AGTTGCCAGCCAACAGATTGCCTCC 195 65 2096 Antisense
TGCCTCCTCTTCCAGGCGATAAAAC 528 585 2114 Antisense
AACCGGTCACGTGGCAGTTACCAAG 340 145 2169 Antisense
Sequence Source Affymetrix Proprietary Database