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[175894_at]

Description ZK105.E /REP_DB=WormBase Gene ID /WP=CE23450 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 79      4grp_total > 12      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 64.5
(-2.2)
A 		61.6
(-2.4)
A 		51.5
(-3)
A 		153.4
(3)
A 		102
B 97.7
(-0.6)
A 		62.9
(-2.3)
A 		49.3
(-3)
A 		168.1
(3)
A 		119
C 104
(-1.2)
A 		63
(-2.3)
A 		33.8
(-3)
A 		267.7
(3)
P 		234
avr 88.7
(-1.3) 		62.5
(-2.3) 		44.9
(-3) 		196.4
(3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 56.2
(1.6)
A 		32.6
(-2.5)
A 		64.4
(3)
A 		29.5
(-3)
A 		36.8
(-1.7)
A 		58.5
(2)
A 		35
B 40.3
(0.2)
A 		63.7
(2.8)
A 		11
(-3)
A 		52.8
(1.6)
A 		55.7
(1.9)
A 		65.2
(3)
A 		54
C 34.6
(-1.3)
A 		83.8
(3)
A 		14.7
(-3)
A 		21.6
(-2.4)
A 		65.4
(1.4)
A 		47.4
(-0.2)
A 		69
avr 43.7
(-0.3) 		60
(3) 		30
(-3) 		34.6
(-2.1) 		52.6
(1.5) 		57
(2.4) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 23.5
(3)
A 		13.4
(-3)
A 		13.5
(-2.9)
A 		22.5
(2.4)
A 		10
B 31.1
(1.8)
A 		15.5
(-2)
A 		11.4
(-3)
A 		35.8
(3)
A 		24
C 34.4
(1.1)
A 		18.1
(-1.9)
A 		11.8
(-3)
A 		45.1
(3)
P 		33
avr 29.7
(1.7) 		15.7
(-2.1) 		12.2
(-3) 		34.5
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 10.4
(-0.4)
A 		11.6
(0.7)
A 		14
(2.8)
A 		7.5
(-3)
A 		11.1
(0.2)
A 		14.2
(3)
A 		7
B 14
(0.1)
A 		21.2
(2.1)
A 		2.7
(-3)
A 		14
(0.1)
A 		22.6
(2.5)
A 		24.3
(3)
A 		22
C 12.8
(-0.5)
A 		25.6
(3)
A 		3.7
(-3)
A 		4.3
(-2.8)
A 		21.2
(1.8)
A 		15.9
(0.3)
A 		22
avr 12.4
(-0.4) 		19.5
(3) 		6.8
(-3) 		8.6
(-2.1) 		18.3
(2.4) 		18.1
(2.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19401
Sequence Type Exemplar sequence
Representative Public ID ZK105.E NCBI
Target Description ZK105.E /REP_DB=WormBase Gene ID /WP=CE23450 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072594
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000002807 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7711813:7713233:1 9/11 None
ZK105.7 ENSEMBL cdna:pseudogene chromosome:CEL140:V:7711642:7712629:1 gene:ZK105.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7708208-7712609(+) 97.78 97.78
Public Domain and Genome References
Ensembl ZK105.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T25496 hypothetical protein C03G6.5 - Caenorhabditis elegans 8.0E-34
blast T25786 hypothetical protein F47D2.9 - Caenorhabditis elegans 2.0E-19
blast NP_504869 Serpentine Receptor, class H family member (srh-187) [Caenorhabditis elegans] gb|AAG24063.1| Serpentine receptor, class h protein 187 [Caenorhabditis elegans] 5.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-25
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.1E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002807 4 5-27,42-64,92-123,127-149
Sequence
Target Sequence 
>C. ELEGANS:175894_AT
gatggtggtaatgtttctcgcaaatgttcatgtctccgtgactgcaatttttgaaagccg
atttttcatactttgtaaatttactggaaagaagtattgggctctgcttcgatggtctcg
cagcgcattatacccgaggaagatcgaagtaattgtagtatttcagaaaattccctgtct
tcccgactatttctatgaaaacacttttgtggcggctgttcacacaactttccacgtttc
cacaagtttcatttttgttttaatcgtttgtatcgaagttttaacatttaaaatgctttt
cttcgcactaattatccaaatgggtgttccattagtcatgctaatcatttcactgacatg
tgcatttatatcagttttatctctatattacaatcaaaaagtcacaaatttctttgtgat
aatcggttcgttgcatggagttgtttcaacattgatgatgctttttgttcataagcctta
tcgtgacgctttgaaaggattcgtttcaaaacaacagccacgtagccagcagagaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGTGGTAATGTTTCTCGCAAAT 128 407 1428 Antisense
TCTCGCAAATGTTCATGTCTCCGTG 663 609 1443 Antisense
TGTCTCCGTGACTGCAATTTTTGAA 52 559 1458 Antisense
GAAGTATTGGGCTCTGCTTCGATGG 371 335 1518 Antisense
GATGGTCTCGCAGCGCATTATACCC 453 405 1538 Antisense
AAACACTTTTGTGGCGGCTGTTCAC 301 129 1626 Antisense
CTTTCCACGTTTCCACAAGTTTCAT 672 221 1655 Antisense
GCTTTTCTTCGCACTAATTATCCAA 169 305 1722 Antisense
ATGGGTGTTCCATTAGTCATGCTAA 109 51 1747 Antisense
AATCGGTTCGTTGCATGGAGTTGTT 126 169 1848 Antisense
AACAGCCACGTAGCCAGCAGAGAAC 643 135 1940 Antisense
Sequence Source Affymetrix Proprietary Database