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[175893_at] 7TM chemoreceptor, srsx family

Description ZK105.C /REP_DB=WormBase Gene ID /WP=CE23449 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 91      4grp_total > 11      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 2.1
(-2.9)
A 		5.8
(-2.1)
A 		1.8
(-3)
A 		29
(3)
A 		27
B 4.7
(0.7)
A 		2.4
(-2.1)
A 		1.7
(-3)
A 		6.6
(3)
A 		5
C 15.5
(-2.2)
A 		17.2
(-2)
A 		9.4
(-3)
A 		56.6
(3)
A 		47
avr 7.4
(-2.3) 		8.5
(-2) 		4.3
(-3) 		30.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 4
(-2.9)
A 		16.5
(0.4)
A 		3.7
(-3)
A 		26.2
(3)
A 		11.7
(-0.9)
A 		11.9
(-0.8)
A 		23
B 25.4
(2.4)
A 		27
(2.7)
A 		2.2
(-2.7)
A 		8.4
(-1.3)
A 		28.2
(3)
M 		0.8
(-3)
A 		27
C 1.3
(-3)
A 		32.5
(1.9)
A 		1.5
(-3)
A 		39.7
(3)
A 		18.4
(-0.3)
A 		26.9
(1)
A 		38
avr 10.2
(-1) 		25.3
(3) 		2.5
(-3) 		24.8
(2.9) 		19.4
(1.4) 		13.2
(-0.2) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.8
(-2.5)
A 		1.3
(-1.7)
A 		0.5
(-3)
A 		4.2
(3)
A 		4
B 1.5
(3)
A 		0.6
(-1.9)
A 		0.4
(-3)
A 		1.4
(2.5)
A 		1
C 5.1
(-1.3)
A 		4.9
(-1.5)
A 		3.3
(-3)
A 		9.6
(3)
A 		6
avr 2.5
(-1.2) 		2.3
(-1.5) 		1.4
(-3) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.7
(-3)
A 		5.9
(2.2)
A 		0.8
(-2.9)
A 		6.7
(3)
A 		3.5
(-0.2)
A 		2.9
(-0.8)
A 		6
B 8.8
(1.6)
A 		9
(1.7)
A 		0.5
(-2.9)
A 		2.2
(-2)
A 		11.4
(3)
M 		0.3
(-3)
A 		11
C 0.5
(-2.9)
A 		9.9
(3)
A 		0.4
(-3)
A 		8
(1.8)
A 		5.9
(0.5)
A 		9
(2.4)
A 		10
avr 3.3
(-0.9) 		8.3
(3) 		0.6
(-3) 		5.6
(0.9) 		6.9
(1.9) 		4.1
(-0.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175893_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19397
Sequence Type Exemplar sequence
Representative Public ID ZK105.C NCBI
Target Description ZK105.C /REP_DB=WormBase Gene ID /WP=CE23449 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072593 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-40) (srsx-40) mRNA, complete cds. 11/11 None
ZK105.4 ENSEMBL cdna:known chromosome:CEL140:V:7703928:7704839:-1 gene:ZK105.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002772 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7703928-7704840(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-40
Ensembl ZK105.4
Entrez Gene 191223 Entrez gene
SwissProt Q965Z7 EMBL-EBI
WormBase CE38258 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68611 Serpentine receptor, class sx protein 40 [Caenorhabditis elegans] ref|NP_504994.2| Serpentine Receptor, class SX family member (srsx-40) [Caenorhabditis elegans] 1.0E-139
blast AAK68611 Serpentine receptor, class sx protein 40 [Caenorhabditis elegans] ref|NP_504994.2| Serpentine Receptor, class SX family member (srsx-40) [Caenorhabditis elegans] 1.0E-89
blast CAH10781 Hypothetical protein F53F8.2 [Caenorhabditis elegans] emb|CAB04462.2| Hypothetical protein F53F8.2 [Caenorhabditis elegans] ref|NP_507994.2| Serpentine Receptor, class SX family member (srsx-35) [Caenorhabditis elegans] 2.0E-20
blast CAB05564 Hypothetical protein M01B2.9 [Caenorhabditis elegans] ref|NP_506776.2| Serpentine Receptor, class SX family member (srsx-39) [Caenorhabditis elegans] 3.0E-20
blast CAH10781 Hypothetical protein F53F8.2 [Caenorhabditis elegans] emb|CAB04462.2| Hypothetical protein F53F8.2 [Caenorhabditis elegans] ref|NP_507994.2| Serpentine Receptor, class SX family member (srsx-35) [Caenorhabditis elegans] 5.0E-15
blast CAB05564 Hypothetical protein M01B2.9 [Caenorhabditis elegans] ref|NP_506776.2| Serpentine Receptor, class SX family member (srsx-39) [Caenorhabditis elegans] 7.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504994.2 7 15-37,49-71,81-103,124-146,166-188,208-230,245-267
ZK105.4 5 15-37,50-72,94-116,137-159,179-201
Sequence
Target Sequence 
>C. ELEGANS:175893_AT
tttacggtttcctattcatcatcggattctttttcaacttgattttcttgattataattt
tgaaaaacaaaaacttgaagtccatgttttatcgtctgattttggtttccatagtttttc
aactttttcagttttctggaatacctctaatattaatttccatcattgttcctttccgac
aagacaaacacaaaagcggggccgggtacccaaaatttggcgacatttgcatgtacctgt
ctatcccgcgttcttttggagctgtcgcatttacaattatgccgcttattttgacaatcg
acagaataattgccacgtgtacacctattcaatacaagaatttgaaacattgtgaagtgt
attatattggatttctactcgtctttccagttatctacgctctttggattcttggctttg
ctatcctacaacaagatactgaaaactcttcaaacatttgtgttctttcaaactgttttg
gcgacgcgtactacttgtacaaagtttcaacgttctcatttgcaattatcttattcccac
tg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACGGTTTCCTATTCATCATCGG 549 671 62 Antisense
GAAGTCCATGTTTTATCGTCTGATT 32 337 138 Antisense
TTAATTTCCATCATTGTTCCTTTCC 396 683 214 Antisense
GACATTTGCATGTACCTGTCTATCC 126 371 283 Antisense
TATGCCGCTTATTTTGACAATCGAC 461 655 339 Antisense
TATATTGGATTTCTACTCGTCTTTC 313 661 424 Antisense
ACTCGTCTTTCCAGTTATCTACGCT 57 99 438 Antisense
TCTACGCTCTTTGGATTCTTGGCTT 101 615 455 Antisense
TTCTTGGCTTTGCTATCCTACAACA 244 687 470 Antisense
ACTGTTTTGGCGACGCGTACTACTT 344 91 533 Antisense
ATTTGCAATTATCTTATTCCCACTG 615 17 579 Antisense
Sequence Source Affymetrix Proprietary Database