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[175891_at]

Description ZC97.1 /REP_DB=WormBase Gene ID /WP=CE25677 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 55      6grp_total > 63      4grp_total > 01      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2811
1 2 3 4 range
A 1431.8
(-3)
P 		1419.8
(-3)
P 		1593.5
(-2.6)
P 		4030.4
(3)
P 		2611
B 1659.1
(-2.6)
P 		1483.9
(-3)
P 		1766.5
(-2.4)
P 		4231.1
(3)
P 		2747
C 1517.1
(-3)
P 		1606.1
(-2.8)
P 		1584.2
(-2.8)
P 		3694.1
(3)
P 		2177
avr 1536
(-2.9) 		1503.3
(-3) 		1648.1
(-2.6) 		3985.2
(3) 		2482

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 821
1 2 3 4 5 6 range
A 1581.8
(-2.8)
P 		1665.3
(-2.1)
P 		2006.3
(0.9)
P 		2246.1
(3)
P 		1559.6
(-3)
P 		1698.8
(-1.8)
P 		687
B 1424.8
(-3)
P 		1657.7
(-0.9)
P 		2095.1
(3)
P 		1781.3
(0.2)
P 		1692.6
(-0.6)
P 		1634
(-1.1)
P 		670
C 1696.4
(-1.4)
P 		1550.6
(-3)
P 		1946.8
(1.2)
P 		2114.1
(3)
P 		1857.1
(0.3)
P 		1811.6
(-0.2)
P 		564
avr 1567.7
(-3) 		1624.5
(-2.3) 		2016.1
(2.6) 		2047.2
(3) 		1703.1
(-1.3) 		1714.8
(-1.2) 		480
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 594
1 2 3 4 range
A 521.3
(1.5)
P 		308.2
(-3)
P 		416.6
(-0.7)
P 		590
(3)
P 		282
B 529.1
(-1.2)
P 		366.5
(-3)
P 		409.3
(-2.5)
P 		901.7
(3)
P 		535
C 502.2
(-1.5)
P 		461.8
(-3)
P 		552.1
(0.4)
P 		622.9
(3)
P 		161
avr 517.5
(-0.4) 		378.8
(-3) 		459.3
(-1.5) 		704.9
(3) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 291.6
(-3)
P 		592.3
(3)
P 		436.9
(-0.1)
P 		569.7
(2.5)
P 		470.6
(0.6)
P 		413.6
(-0.6)
P 		301
B 495.8
(-2.3)
P 		551.8
(-0.8)
P 		508.8
(-2)
P 		471.8
(-3)
P 		687.7
(3)
P 		609.3
(0.8)
P 		216
C 628.8
(3)
P 		473.1
(-1.6)
P 		495.5
(-0.9)
P 		425.1
(-3)
P 		600.9
(2.2)
P 		606.4
(2.3)
P 		204
avr 472.1
(-3) 		539.1
(0.5) 		480.4
(-2.6) 		488.9
(-2.1) 		586.4
(3) 		543.1
(0.7) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175891_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8038
Sequence Type Exemplar sequence
Representative Public ID ZC97.1 NCBI
Target Description ZC97.1 /REP_DB=WormBase Gene ID /WP=CE25677 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066288(11), NM_181943(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066288 NCBI Caenorhabditis elegans ZC97.1a (ZC97.1) mRNA, complete cds. 11/11 None
NM_181943 NCBI Caenorhabditis elegans ZC97.1b (ZC97.1) mRNA, complete cds. 10/11 None
GENEFINDER00000038353 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7761909:7763526:-1 11/11 None
SNAP00000038351 ENSEMBL cdna:SNAP chromosome:CEL140:III:7762003:7763526:-1 11/11 None
ZC97.1b ENSEMBL cdna:known chromosome:CEL140:III:7761912:7763524:-1 gene:ZC97.1 10/11 None
ZC97.1a ENSEMBL cdna:known chromosome:CEL140:III:7761912:7763524:-1 gene:ZC97.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7762000-7763476(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZC97.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28180 Temporarily assigned gene name protein 354, isoform a [Caenorhabditis elegans] ref|NP_498689.1| ZC97.1a [Caenorhabditis elegans] sp|P34599|MTX2_CAEEL Metaxin 2 homolog 1.0E-138
blast CAE57189 Hypothetical protein CBG00033 [Caenorhabditis briggsae] 1.0E-134
blast CAE57189 Hypothetical protein CBG00033 [Caenorhabditis briggsae] 1.0E-133
blast AAH73083 LOC407750 protein [Xenopus laevis] 8.0E-49
blast AAH73083 LOC407750 protein [Xenopus laevis] 9.0E-49
Sequence
Target Sequence 
>C. ELEGANS:175891_AT
tgccattcaatgttcgtcaacgaccgaatgtagattttatttctcctgatggagtcgtcc
cacttctgaaaatcaacaaaactctcatcacagggttcaacgccattgtcgacttcgtgc
ataagaaaggagtcactcttacatcacatctcagcgaaacgcaagttgccgacatgagag
ctaatatttcgatgatcgaacatcttcttaccactgtcgagaagtttgtactctggaacc
acgacgagacgtacgataaggtgacaaagttgagatacggaagtgtttatcactggccac
tttcgtctgtcttgccttttgttaagcgtcgaaagattcttgaagagttgtctgataagg
actgggacaccaagacaatggacgaagtcggtgaacaagccgataaagttttccgtgctc
tctctgctcaactgggaagtcaaaaatatctaactggagatcttccaaccgaagctgatg
ctttactctttggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCATTCAATGTTCGTCAACGACC 444 585 134 Antisense
ATTTCTCCTGATGGAGTCGTCCCAC 80 17 172 Antisense
ATCACAGGGTTCAACGCCATTGTCG 259 27 220 Antisense
CGCCATTGTCGACTTCGTGCATAAG 619 257 234 Antisense
GGAGTCACTCTTACATCACATCTCA 463 517 262 Antisense
ATGATCGAACATCTTCTTACCACTG 266 47 325 Antisense
GTACTCTGGAACCACGACGAGACGT 337 459 361 Antisense
GTCTGTCTTGCCTTTTGTTAAGCGT 339 471 438 Antisense
AGCCGATAAAGTTTTCCGTGCTCTC 95 83 531 Antisense
CTCTCTCTGCTCAACTGGGAAGTCA 344 231 551 Antisense
GAAGCTGATGCTTTACTCTTTGGAC 274 343 604 Antisense
Sequence Source Affymetrix Proprietary Database