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[175888_at]

Description F12E12.B /REP_DB=WormBase Gene ID /WP=CE20671 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 28      4grp_total > 43      6grp_cgc > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 5.9
(-2.6)
A 		39.2
(3)
A 		3.5
(-3)
A 		4.8
(-2.8)
A 		36
B 5.1
(-0.8)
A 		4.3
(-1.7)
A 		8.3
(3)
A 		3.2
(-3)
A 		5
C 3
(-3)
A 		4.7
(-1.7)
A 		4.9
(-1.5)
A 		10.8
(3)
A 		8
avr 4.7
(-3) 		16.1
(3) 		5.6
(-2.5) 		6.3
(-2.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 15
(2.5)
A 		8.6
(-0.7)
A 		5.3
(-2.3)
A 		4
(-3)
A 		15.9
(3)
A 		7.7
(-1.1)
A 		12
B 10.2
(3)
A 		8.6
(1.6)
A 		4.7
(-1.6)
A 		9.3
(2.2)
A 		4.6
(-1.7)
A 		3.1
(-3)
A 		7
C 11.9
(2.8)
A 		4.5
(-3)
A 		5.4
(-2.3)
A 		5.9
(-1.9)
A 		5.1
(-2.5)
A 		12.2
(3)
A 		8
avr 12.4
(3) 		7.2
(-1.3) 		5.1
(-3) 		6.4
(-1.9) 		8.5
(-0.2) 		7.7
(-0.9) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.1
(-1.9)
A 		8.5
(3)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		8
B 1.6
(1.5)
A 		1.1
(-1)
A 		1.9
(3)
A 		0.7
(-3)
A 		1
C 1
(-3)
A 		1.3
(-0.8)
A 		1.7
(2.3)
A 		1.8
(3)
A 		1
avr 1.6
(-1.8) 		3.6
(3) 		1.5
(-2) 		1.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.8
(-0.2)
A 		3
(0.2)
A 		1.2
(-2.7)
A 		1
(-3)
A 		4.8
(3)
A 		1.9
(-1.6)
A 		4
B 3.5
(3)
A 		2.9
(1.5)
A 		1.2
(-2.8)
A 		2.5
(0.5)
A 		1.9
(-1)
A 		1.1
(-3)
A 		2
C 4.4
(3)
A 		1.4
(-2.6)
A 		1.4
(-2.6)
A 		1.2
(-3)
A 		1.6
(-2.3)
A 		4.1
(2.4)
A 		3
avr 3.6
(3) 		2.4
(-0.1) 		1.3
(-3) 		1.6
(-2.2) 		2.8
(0.9) 		2.4
(-0.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175888_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18899
Sequence Type Exemplar sequence
Representative Public ID F12E12.B NCBI
Target Description F12E12.B /REP_DB=WormBase Gene ID /WP=CE20671 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062239 NCBI Caenorhabditis elegans F12E12.7 (F12E12.7) mRNA, complete cds. 11/11 A 
SNAP00000025175 ENSEMBL cdna:SNAP chromosome:CEL140:II:3744471:3745904:-1 10/11 None
GENEFINDER00000025186 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3744471:3745904:-1 11/11 None
F12E12.7 ENSEMBL cdna:known chromosome:CEL140:II:3742517:3752272:-1 gene:F12E12.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3744469-3747452(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-11
Ensembl F12E12.7
Entrez Gene 173719 Entrez gene
SwissProt Q9BLB8 EMBL-EBI
WormBase CE26808 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18930 Hypothetical protein F12E12.7 [Caenorhabditis elegans] ref|NP_494640.1| F12E12.7 [Caenorhabditis elegans] 0.0
blast AAK18930 Hypothetical protein F12E12.7 [Caenorhabditis elegans] ref|NP_494640.1| F12E12.7 [Caenorhabditis elegans] 1.0E-116
blast CAB05801 Hypothetical protein F26D2.15 [Caenorhabditis elegans] emb|CAB04187.1| Hypothetical protein F26D2.15 [Caenorhabditis elegans] ref|NP_507157.1| F26D2.15 [Caenorhabditis elegans] 1.0E-105
blast NP_503752 DeHydrogenases, Short chain family member (dhs-14) [Caenorhabditis elegans] gb|AAF39953.1| Dehydrogenases, short chain protein 14 [Caenorhabditis elegans] 1.0E-103
blast NP_503753 R05D8.9 [Caenorhabditis elegans] gb|AAF39944.1| Hypothetical protein R05D8.9 [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 5.0E-12
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 6.0E-17
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.7E-47
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 4.7E-25
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.6E-19
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 5.0E-12
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:175888_AT
ggagccaaagtaaccatcaccggaagaaacgctgagagacttgaagagacacgacaagcc
attctaaaatctggagtacctgctgaaaacgttcttgctattgccacagacttggctaca
gaccagggacaaaccgacctaatcaatgggactcttcagaatattggtgccggacctcac
gcgcatcccgatatgatgtactacggaatgtccaaagctgcacttgaccagttcacaaga
agcactgcaatcacactgattcaacacggggtccgtgtgaactcggtgagcccgggagta
gtctacacgggaattggagaggccatgggattcccaccaggtgcattcgagaagaccatg
aaattctacgagtcccacaaggaatgtgtcccatgcggtcacatggctcaacccgtagaa
attgctcaagttatcgcatttttggcggaccgtaccatgtcttcctatatcattgggcag
tcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCCAAAGTAACCATCACCGGAA 10 523 913 Antisense
AACGTTCTTGCTATTGCCACAGACT 172 145 1000 Antisense
AACCGACCTAATCAATGGGACTCTT 378 145 1044 Antisense
CAGAATATTGGTGCCGGACCTCACG 74 205 1069 Antisense
AAAGCTGCACTTGACCAGTTCACAA 156 125 1126 Antisense
CACACTGATTCAACACGGGGTCCGT 523 191 1164 Antisense
GAGCCCGGGAGTAGTCTACACGGGA 424 385 1200 Antisense
TCCCACCAGGTGCATTCGAGAAGAC 253 597 1244 Antisense
GTCACATGGCTCAACCCGTAGAAAT 317 465 1310 Antisense
AGTTATCGCATTTTTGGCGGACCGT 358 59 1341 Antisense
GTCTTCCTATATCATTGGGCAGTCC 472 467 1371 Antisense
Sequence Source Affymetrix Proprietary Database