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[175884_at]

Description F12E12.H /REP_DB=WormBase Gene ID /WP=CE20677 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 13      4grp_total > 28      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 85.6
(1.6)
A 		99.5
(3)
A 		38.4
(-3)
A 		86.5
(1.7)
A 		61
B 37.5
(-3)
A 		42
(-2)
A 		57.4
(1.2)
A 		65.8
(3)
A 		28
C 72.1
(-0.1)
A 		83.7
(0.8)
A 		32.2
(-3)
A 		114.5
(3)
P 		82
avr 65.1
(-0.1) 		75.1
(1.2) 		42.7
(-3) 		88.9
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 93
(3)
A 		65.4
(0.2)
A 		50.1
(-1.3)
A 		61.6
(-0.2)
A 		33.6
(-3)
A 		53.7
(-1)
A 		59
B 62.6
(1.1)
A 		79.5
(3)
A 		58
(0.5)
A 		67.3
(1.6)
A 		41.9
(-1.3)
A 		27.3
(-3)
A 		52
C 64.4
(1.7)
A 		74.4
(3)
A 		66
(1.9)
A 		55.7
(0.6)
A 		43.1
(-1.1)
A 		28.5
(-3)
A 		46
avr 73.3
(3) 		73.1
(3) 		58
(0.5) 		61.5
(1.1) 		39.5
(-2.5) 		36.5
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 31.2
(3)
A 		21.6
(0.3)
A 		10
(-3)
A 		12.7
(-2.2)
A 		21
B 12
(-0.3)
A 		10.4
(-3)
A 		13.3
(1.8)
A 		14
(3)
A 		4
C 23.9
(2.9)
A 		24.1
(3)
A 		11.2
(-3)
A 		19.3
(0.8)
P 		13
avr 22.4
(3) 		18.7
(1) 		11.5
(-3) 		15.3
(-0.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 17.1
(0.2)
A 		23.3
(3)
A 		10.9
(-2.6)
A 		15.6
(-0.5)
A 		10.1
(-3)
A 		13.1
(-1.6)
A 		13
B 21.8
(1.3)
A 		26.5
(3)
A 		14.1
(-1.6)
A 		17.8
(-0.2)
A 		17
(-0.5)
A 		10.2
(-3)
A 		16
C 23.9
(3)
A 		22.7
(2.5)
A 		16.8
(0)
A 		11.2
(-2.3)
A 		14
(-1.1)
A 		9.5
(-3)
A 		14
avr 20.9
(1.5) 		24.2
(3) 		13.9
(-1.6) 		14.9
(-1.2) 		13.7
(-1.7) 		10.9
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18889
Sequence Type Exemplar sequence
Representative Public ID F12E12.H NCBI
Target Description F12E12.H /REP_DB=WormBase Gene ID /WP=CE20677 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062237(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062237 NCBI Caenorhabditis elegans F12E12.2 (F12E12.2) mRNA, complete cds. 11/11 None
SNAP00000025172 ENSEMBL cdna:SNAP chromosome:CEL140:II:3739851:3740831:1 11/11 None
GENEFINDER00000025187 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3739941:3740831:1 11/11 None
F12E12.2 ENSEMBL cdna:known chromosome:CEL140:II:3739941:3740831:1 gene:F12E12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3739939-3740830(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F12E12.2
Entrez Gene 184386 Entrez gene
SwissProt Q9BLC0 EMBL-EBI
WormBase CE20677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18926 Hypothetical protein F12E12.2 [Caenorhabditis elegans] ref|NP_494638.1| F12E12.2 [Caenorhabditis elegans] 2.0E-88
Sequence
Target Sequence 
>C. ELEGANS:175884_AT
atgagtatttccgcaatctctctactttcccaacctgcctgggaggtcatggtgcaagat
ttctggaaaagagcttttggagacctggtgccgatgactttgcttgagcagaaagtcgcg
tacttcacaatatgcagatatgcgtgtggagattccagtgctatacttacggttcctttt
ttcccaacggttcctgtaatgaaagttggagacgacctgcccgaaattgatgttccaagt
tcggcattcatctacttcaaaagtgaatatgccaagcgcagtcctcccaacccgattaat
agaataagaaatggacaacagagagctggtgatccacacactctcgcctggcaggcacta
ctcccggttcaaaaggaaatgtggatcacgtgcttccagaaacgcaagaaacaagccgag
acactcattcttgctgggtggtacaagaagaagccgagcgggtatcaactgagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGTATTTCCGCAATCTCTCTAC 663 45 13 Antisense
AAGAGCTTTTGGAGACCTGGTGCCG 433 153 81 Antisense
GGTGCCGATGACTTTGCTTGAGCAG 590 501 99 Antisense
CAGTGCTATACTTACGGTTCCTTTT 330 103 168 Antisense
AGACGACCTGCCCGAAATTGATGTT 136 69 222 Antisense
TGTTCCAAGTTCGGCATTCATCTAC 476 563 243 Antisense
GTCCTCCCAACCCGATTAATAGAAT 194 475 293 Antisense
GAGAGCTGGTGATCCACACACTCTC 201 395 333 Antisense
GGATCACGTGCTTCCAGAAACGCAA 626 511 395 Antisense
GAGACACTCATTCTTGCTGGGTGGT 125 393 430 Antisense
AAGCCGAGCGGGTATCAACTGAGAC 217 149 463 Antisense
Sequence Source Affymetrix Proprietary Database