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[175882_at]

Description Y73B3A.R /REP_DB=WormBase Gene ID /WP=CE26586 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 19      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.2
(-2.2)
A 		4.1
(3)
A 		1.9
(-3)
A 		2.9
(-0.3)
A 		2
B 1.8
(-2.4)
A 		3.9
(0.6)
A 		5.6
(3)
A 		1.4
(-3)
A 		4
C 2.7
(-1.3)
A 		5
(3)
A 		1.8
(-3)
A 		5
(3)
A 		3
avr 2.2
(-3) 		4.3
(3) 		3.1
(-0.4) 		3.1
(-0.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 22.9
(3)
A 		1.9
(-3)
A 		3.2
(-2.6)
A 		4.9
(-2.1)
A 		7.1
(-1.5)
A 		1.8
(-3)
A 		21
B 4.8
(3)
A 		2.3
(-1.5)
A 		2.8
(-0.6)
A 		2.7
(-0.8)
A 		1.9
(-2.3)
A 		1.5
(-3)
A 		3
C 1.9
(-3)
A 		2.1
(-2.5)
A 		2.5
(-1.6)
A 		2.5
(-1.6)
A 		4.4
(3)
A 		1.9
(-3)
A 		3
avr 9.9
(3) 		2.1
(-2.7) 		2.8
(-2.2) 		3.4
(-1.8) 		4.5
(-1) 		1.7
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.8
(1.8)
A 		0.9
(3)
A 		0.5
(-1.8)
A 		0.4
(-3)
A 		1
B 0.6
(-1.2)
A 		1
(1.2)
A 		1.3
(3)
A 		0.3
(-3)
A 		1
C 0.9
(-0.8)
A 		1.4
(3)
A 		0.6
(-3)
A 		0.8
(-1.5)
A 		1
avr 0.8
(0) 		1.1
(3) 		0.8
(0) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.2
(3)
A 		0.7
(-2.5)
A 		0.7
(-2.5)
A 		1.2
(-1.7)
A 		2.1
(-0.3)
A 		0.4
(-3)
A 		4
B 1.7
(3)
A 		0.8
(-1.5)
A 		0.7
(-2)
A 		0.7
(-2)
A 		0.8
(-1.5)
A 		0.5
(-3)
A 		1
C 0.7
(-1.7)
A 		0.6
(-2.3)
A 		0.6
(-2.3)
A 		0.5
(-3)
A 		1.4
(3)
A 		0.6
(-2.3)
A 		1
avr 2.2
(3) 		0.7
(-2.3) 		0.7
(-2.3) 		0.8
(-1.9) 		1.4
(0.2) 		0.5
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175882_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19572
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.R NCBI
Target Description Y73B3A.R /REP_DB=WormBase Gene ID /WP=CE26586 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075664(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075664 NCBI Caenorhabditis elegans Y73B3A.8 (Y73B3A.8) mRNA, complete cds. 11/11 None
GENEFINDER00000022357 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:140442:141249:-1 11/11 None
Y73B3A.8 ENSEMBL cdna:known chromosome:CEL140:X:140434:140683:-1 gene:Y73B3A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:140433-140683(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B3A.8
Entrez Gene 190626 Entrez gene
SwissProt Q95XF7 EMBL-EBI
WormBase CE26586 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39356 Hypothetical protein Y73B3A.8 [Caenorhabditis elegans] ref|NP_508065.1| Y73B3A.8 [Caenorhabditis elegans] 3.0E-28
Sequence
Target Sequence 
>C. ELEGANS:175882_AT
ggaacatgacgaattcgacgccaagatcgtgctctccacctcaacctactcttctgtttt
tttccctacttcccgaaggtttccagctcctcctggctccatggaacacgacgaattcga
cgccaggatcatgctcttggcaccagacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACATGACGAATTCGACGCCAAG 469 529 15 Antisense
GAATTCGACGCCAAGATCGTGCTCT 148 325 25 Antisense
TCCTGGCTCCATGGAACACGACGAA 606 593 105 Antisense
GGCTCCATGGAACACGACGAATTCG 396 537 109 Antisense
GGAACACGACGAATTCGACGCCAGG 158 527 117 Antisense
ACGACGAATTCGACGCCAGGATCAT 280 91 122 Antisense
CGAATTCGACGCCAGGATCATGCTC 586 253 126 Antisense
AATTCGACGCCAGGATCATGCTCTT 534 177 128 Antisense
GACGCCAGGATCATGCTCTTGGCAC 388 381 133 Antisense
CGCCAGGATCATGCTCTTGGCACCA 10 257 135 Antisense
GATCATGCTCTTGGCACCAGACAAT 5 421 141 Antisense
Sequence Source Affymetrix Proprietary Database